VIMSS Operon Predictions for Bartonella bacilliformis KC583

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1976294 1976295 BARBAKC583_0001 BARBAKC583_0003 FALSE 0.015 119 -6.505
 1976296 1976297 BARBAKC583_0002 BARBAKC583_0004 polA dnaQ TRUE 0.592 301 -21.421
 1976297 1976298 BARBAKC583_0004 BARBAKC583_0005 dnaQ coaE TRUE 0.995 5 108.685
 1976298 1976299 BARBAKC583_0005 BARBAKC583_0006 coaE aroE TRUE 0.99 -3 72.272
 1976299 1976300 BARBAKC583_0006 BARBAKC583_0007 aroE maf1 TRUE 0.981 -7 72.781
 1976300 1976301 BARBAKC583_0007 BARBAKC583_0008 maf1 TRUE 0.981 -3 49.268
 1976302 1976303 BARBAKC583_0009 BARBAKC583_0010 rho trmE TRUE 0.975 34 32.05
 1976303 1976304 BARBAKC583_0010 BARBAKC583_0011 trmE gidA TRUE 0.947 109 570.554
 1976304 1976305 BARBAKC583_0011 BARBAKC583_0012 gidA gidB TRUE 0.996 0 363.537
 1976305 1976306 BARBAKC583_0012 BARBAKC583_0013 gidB parA TRUE 0.996 6 338.633
 1976306 1976307 BARBAKC583_0013 BARBAKC583_0014 parA parB TRUE 0.988 52 1402.225
 1976308 1976309 BARBAKC583_0015 BARBAKC583_0016 ispZ FALSE 0.038 372 0
 1976309 1976310 BARBAKC583_0016 BARBAKC583_0017 ispZ ftsY TRUE 0.981 -3 21.387
 1976310 1976311 BARBAKC583_0017 BARBAKC583_0018 ftsY TRUE 0.846 15 21.711
 1976311 1976312 BARBAKC583_0018 BARBAKC583_0019 dapF TRUE 0.993 0 107.093
 1976313 1976314 BARBAKC583_0020 BARBAKC583_0021 TRUE 0.739 93 5.377
 1976314 1976315 BARBAKC583_0021 BARBAKC583_0022 mdh FALSE 0.478 268 19.493
 1976315 1976316 BARBAKC583_0022 BARBAKC583_0023 mdh sucC TRUE 0.959 81 80.359
 1976316 1976317 BARBAKC583_0023 BARBAKC583_0024 sucC sucD TRUE 1 4 1609.113
 1976317 1976318 BARBAKC583_0024 BARBAKC583_0025 sucD sucA TRUE 0.946 153 76.761
 1976318 1976319 BARBAKC583_0025 BARBAKC583_0026 sucA sucB TRUE 0.998 34 1306.535
 1976319 1976320 BARBAKC583_0026 BARBAKC583_0027 sucB lpdA1 TRUE 0.995 33 636.385
 1976321 1976322 BARBAKC583_0028 BARBAKC583_0029 lys1 nspC TRUE 0.989 56 285.55
 1976323 1976324 BARBAKC583_0030 BARBAKC583_0031 phaAB phaC TRUE 0.999 0 543.577
 1976324 1976325 BARBAKC583_0031 BARBAKC583_0032 phaC phaD TRUE 1 3 558.36
 1976325 1976326 BARBAKC583_0032 BARBAKC583_0033 phaD phaE TRUE 0.998 -3 546.132
 1976326 1976327 BARBAKC583_0033 BARBAKC583_0034 phaE phaF TRUE 0.998 -3 490.05
 1976327 1976328 BARBAKC583_0034 BARBAKC583_0035 phaF phaG TRUE 0.996 -3 108.933
 1976329 1976330 BARBAKC583_0036 BARBAKC583_0037 aroB FALSE 0.001 417 -3.865
 1976330 1976331 BARBAKC583_0037 BARBAKC583_0038 aroB aroK TRUE 0.996 -31 1094.34
 1976332 1976333 BARBAKC583_0039 BARBAKC583_0040 xerD accA TRUE 0.895 76 31.56
 1976333 1976334 BARBAKC583_0040 BARBAKC583_0041 accA FALSE 0.081 36 -0.691
 1976335 1976336 BARBAKC583_0042 BARBAKC583_0043 FALSE 0.13 91 -6.615
 1976337 1976338 BARBAKC583_0044 BARBAKC583_0045 FALSE 0.056 305 0
 1976340 1976341 BARBAKC583_0047 BARBAKC583_0048 TRUE 0.966 52 433.833
 1976341 1976342 BARBAKC583_0048 BARBAKC583_0049 TRUE 0.993 -3 459.823
 1976342 1976343 BARBAKC583_0049 BARBAKC583_0050 holA TRUE 0.632 4 -3.563
 1976343 1976344 BARBAKC583_0050 BARBAKC583_0051 holA FALSE 0.014 136 -23.222
 1976344 1976345 BARBAKC583_0051 BARBAKC583_0052 FALSE 0.164 19 -7.632
 1976347 1976348 BARBAKC583_0054 BARBAKC583_0055 argH TRUE 0.84 59 1.714
 1976348 1976349 BARBAKC583_0055 BARBAKC583_0056 lysA TRUE 0.976 9 1.714
 1976349 1976350 BARBAKC583_0056 BARBAKC583_0057 lysA TRUE 0.827 115 54.465
 1976350 1976351 BARBAKC583_0057 BARBAKC583_0058 FALSE 0.003 282 -10.619
 1976354 1976355 BARBAKC583_0060 BARBAKC583_0062 FALSE 0.018 92 -20.389
 1976356 1976357 BARBAKC583_0063 BARBAKC583_0064 TRUE 0.972 12 0.052
 1976357 1976358 BARBAKC583_0064 BARBAKC583_0065 FALSE 0.026 83 5.882
 1976360 1976361 BARBAKC583_0067 BARBAKC583_0068 ffh FALSE 0.033 246 -19.413
 1976361 1976362 BARBAKC583_0068 BARBAKC583_0069 ffh rpsP FALSE 0.328 430 201.328
 1976364 1976365 BARBAKC583_0071 BARBAKC583_0072 TRUE 0.845 111 24.934
 1976365 1976366 BARBAKC583_0072 BARBAKC583_0073 TRUE 0.925 68 61.361
 1976366 1976367 BARBAKC583_0073 BARBAKC583_0074 purH TRUE 0.823 171 71.172
 1976367 1976368 BARBAKC583_0074 BARBAKC583_0075 purH FALSE 0.01 165 -7.469
 1976370 1976371 BARBAKC583_0077 BARBAKC583_0078 rpmB TRUE 0.764 125 14.702
 1976372 1976373 BARBAKC583_0079 BARBAKC583_0080 cobT cobS TRUE 0.999 15 109.16
 1976373 1976374 BARBAKC583_0080 BARBAKC583_0081 cobS TRUE 0.574 268 50.424
 1976376 1976377 BARBAKC583_0083 BARBAKC583_0084 xerC FALSE 0.212 3 -3.559
 1976378 1976379 BARBAKC583_0085 BARBAKC583_0086 rimM trmD TRUE 0.995 50 1217.632
 1976379 1976380 BARBAKC583_0086 BARBAKC583_0087 trmD rplS TRUE 0.962 206 1183.124
 1976380 1976381 BARBAKC583_0087 BARBAKC583_0088 rplS sdhC FALSE 0.003 596 -18.761
 1976381 1976382 BARBAKC583_0088 BARBAKC583_0089 sdhC sdhD TRUE 1 19 183.141
 1976382 1976383 BARBAKC583_0089 BARBAKC583_0090 sdhD sdhA TRUE 1 5 253.424
 1976383 1976384 BARBAKC583_0090 BARBAKC583_0091 sdhA sdhB TRUE 1 16 1210.269
 1976386 1976387 BARBAKC583_0093 BARBAKC583_0094 TRUE 0.573 297 50.043
 1976387 1976388 BARBAKC583_0094 BARBAKC583_0095 xth1 TRUE 0.989 6 16.064
 1976388 1976389 BARBAKC583_0095 BARBAKC583_0096 xth1 FALSE 0.005 459 -19.138
 1976389 1976390 BARBAKC583_0096 BARBAKC583_0097 macB TRUE 0.991 29 470.331
 1976391 1976392 BARBAKC583_0098 BARBAKC583_0099 TRUE 0.718 150 12.09
 1976392 1976393 BARBAKC583_0099 BARBAKC583_0100 ftsE TRUE 0.992 -7 80.34
 1976393 1976394 BARBAKC583_0100 BARBAKC583_0101 ftsE acsA FALSE 0.056 154 -19.67
 1976394 1976395 BARBAKC583_0101 BARBAKC583_0102 acsA FALSE 0.011 163 -24.777
 1976395 1976396 BARBAKC583_0102 BARBAKC583_0103 TRUE 0.833 17 0
 1976397 1976398 BARBAKC583_0104 BARBAKC583_0105 leuS TRUE 0.977 29 48.122
 1976400 1976401 BARBAKC583_0107 BARBAKC583_0108 priA FALSE 0.063 292 0
 1976401 1976402 BARBAKC583_0108 BARBAKC583_0109 priA FALSE 0.288 98 0
 1976402 1976403 BARBAKC583_0109 BARBAKC583_0110 TRUE 0.867 7 0
 1976403 1976404 BARBAKC583_0110 BARBAKC583_0111 atpH FALSE 0.296 93 0
 1976404 1976405 BARBAKC583_0111 BARBAKC583_0112 atpH atpA TRUE 1 0 1723.139
 1976405 1976406 BARBAKC583_0112 BARBAKC583_0113 atpA atpG TRUE 1 17 2122.41
 1976406 1976407 BARBAKC583_0113 BARBAKC583_0114 atpG atpD TRUE 1 23 1878.05
 1976407 1976408 BARBAKC583_0114 BARBAKC583_0115 atpD atpC TRUE 0.999 48 622.085
 1976408 1976409 BARBAKC583_0115 BARBAKC583_0116 atpC FALSE 0.14 25 -1.117
 1976409 1976410 BARBAKC583_0116 BARBAKC583_0117 TRUE 0.989 17 81.65
 1976414 1976415 BARBAKC583_0121 BARBAKC583_0122 mtgA rpmF TRUE 0.601 226 14.511
 1976416 1976417 BARBAKC583_0123 BARBAKC583_0124 fdxA FALSE 0.432 296 54.869
 1976417 1976418 BARBAKC583_0124 BARBAKC583_0125 fdxA FALSE 0.153 22 1.988
 1976421 1976422 BARBAKC583_0128 BARBAKC583_0129 thiN FALSE 0.113 452 0.052
 1976422 1976423 BARBAKC583_0129 BARBAKC583_0131 TRUE 0.773 70 0.052
 1976425 1976426 BARBAKC583_0132 BARBAKC583_0133 FALSE 0.342 75 0
 1976426 1976427 BARBAKC583_0133 BARBAKC583_0134 TRUE 0.706 32 0
 1976428 1976429 BARBAKC583_0135 BARBAKC583_0136 TRUE 0.98 14 15.26
 1976430 1976431 BARBAKC583_0137 BARBAKC583_0138 tkt gap TRUE 0.998 2 366.362
 1976431 1976432 BARBAKC583_0138 BARBAKC583_0139 gap FALSE 0.311 83 0
 1976432 1976433 BARBAKC583_0139 BARBAKC583_0140 pgk FALSE 0.279 103 0
 1976433 1976434 BARBAKC583_0140 BARBAKC583_0141 pgk fbaB TRUE 0.976 139 25.604
 1976437 1976438 BARBAKC583_0144 BARBAKC583_0145 tolB TRUE 0.899 42 1.92
 1976438 1976439 BARBAKC583_0145 BARBAKC583_0146 tolR TRUE 0.648 150 1.92
 1976439 1976440 BARBAKC583_0146 BARBAKC583_0147 tolR tolQ TRUE 0.999 13 583.611
 1976440 1976441 BARBAKC583_0147 BARBAKC583_0148 tolQ ybgC FALSE 0.474 490 703.132
 1976441 1976442 BARBAKC583_0148 BARBAKC583_0149 ybgC ruvB TRUE 0.988 -7 220.282
 1976442 1976443 BARBAKC583_0149 BARBAKC583_0150 ruvB ruvA TRUE 1 8 1301.603
 1976443 1976444 BARBAKC583_0150 BARBAKC583_0151 ruvA ruvC TRUE 1 5 968.01
 1976446 1976447 BARBAKC583_0153 BARBAKC583_0154 FALSE 0.002 378 -6.231
 1976448 1976449 BARBAKC583_0155 BARBAKC583_0156 TRUE 0.604 3 -4.632
 1976449 1976450 BARBAKC583_0156 BARBAKC583_0157 FALSE 0.093 245 0
 1976450 1976451 BARBAKC583_0157 BARBAKC583_0158 efp FALSE 0.053 314 0
 1976451 1976452 BARBAKC583_0158 BARBAKC583_0159 efp TRUE 0.989 4 78.755
 1976455 1976456 BARBAKC583_0162 BARBAKC583_0163 FALSE 0.216 154 0
 1976457 1976458 BARBAKC583_0164 BARBAKC583_0165 pal FALSE 0.002 318 -14.289
 1976460 1976461 BARBAKC583_0167 BARBAKC583_0168 tilS hflB FALSE 0.356 124 0
 1976461 1976462 BARBAKC583_0168 BARBAKC583_0169 hflB FALSE 0.05 322 0
 1976462 1976463 BARBAKC583_0169 BARBAKC583_0170 FALSE 0.184 171 0
 1976463 1976464 BARBAKC583_0170 BARBAKC583_0171 glmM TRUE 0.862 11 0
 1976464 1976465 BARBAKC583_0171 BARBAKC583_0172 glmM FALSE 0.019 479 0
 1976465 1976466 BARBAKC583_0172 BARBAKC583_0173 TRUE 0.813 20 0
 1976466 1976467 BARBAKC583_0173 BARBAKC583_0174 exbD TRUE 0.99 0 23.965
 1976467 1976468 BARBAKC583_0174 BARBAKC583_0175 exbD FALSE 0.244 131 0
 1976468 1976469 BARBAKC583_0175 BARBAKC583_0176 FALSE 0.192 165 0
 1976469 1976470 BARBAKC583_0176 BARBAKC583_0177 FALSE 0.261 119 0
 1976475 1976476 BARBAKC583_0182 BARBAKC583_0183 TRUE 0.981 13 15.289
 1976478 1976479 BARBAKC583_0185 BARBAKC583_0186 TRUE 0.758 28 0
 1976479 1976480 BARBAKC583_0186 BARBAKC583_0187 TRUE 0.895 41 0.017
 1976483 1976484 BARBAKC583_0190 BARBAKC583_0191 FALSE 0.301 90 0
 1976484 1976485 BARBAKC583_0191 BARBAKC583_0192 FALSE 0.073 280 0
 1976485 1976486 BARBAKC583_0192 BARBAKC583_0193 FALSE 0.003 311 0.052
 1976486 1976487 BARBAKC583_0193 BARBAKC583_0194 TRUE 0.867 6 0
 1976487 1976488 BARBAKC583_0194 BARBAKC583_0195 TRUE 0.867 6 0
 1976488 1976489 BARBAKC583_0195 BARBAKC583_0196 FALSE 0.002 331 -7.461
 1976489 1976490 BARBAKC583_0196 BARBAKC583_0197 TRUE 0.723 31 0
 1976491 1976492 BARBAKC583_0198 BARBAKC583_0199 FALSE 0.035 382 0
 1976493 1976494 BARBAKC583_0200 BARBAKC583_0201 murA TRUE 0.614 151 0.035
 1976495 1976496 BARBAKC583_0202 BARBAKC583_0203 TRUE 0.988 3 23.253
 1976496 1976497 BARBAKC583_0203 BARBAKC583_0204 FALSE 0.001 914 -10.748
 1976497 1976498 BARBAKC583_0204 BARBAKC583_0205 rpmJ FALSE 0.254 387 12.555
 1976498 1976499 BARBAKC583_0205 BARBAKC583_0206 rpmJ FALSE 0.019 482 0
 1976499 1976500 BARBAKC583_0206 BARBAKC583_0207 TRUE 0.866 8 0
 1976500 1976501 BARBAKC583_0207 BARBAKC583_0208 purK FALSE 0.029 411 0
 1976501 1976502 BARBAKC583_0208 BARBAKC583_0209 purK purE TRUE 1 9 1554.955
 1976503 1976504 BARBAKC583_0210 BARBAKC583_0211 infA FALSE 0.023 439 0
 1976504 1976505 BARBAKC583_0211 BARBAKC583_0212 infA maf2 FALSE 0.286 477 120.354
 1976505 1976506 BARBAKC583_0212 BARBAKC583_0213 maf2 TRUE 0.722 159 18.14
 1976506 1976507 BARBAKC583_0213 BARBAKC583_0214 FALSE 0.032 394 0
 1976507 1976508 BARBAKC583_0214 BARBAKC583_0215 FALSE 0.042 350 0
 1976508 1976509 BARBAKC583_0215 BARBAKC583_0216 clpB TRUE 0.866 5 0
 1976509 1976510 BARBAKC583_0216 BARBAKC583_0217 clpB FALSE 0.09 247 0
 1976510 1976511 BARBAKC583_0217 BARBAKC583_0218 FALSE 0.096 243 0
 1976511 1976512 BARBAKC583_0218 BARBAKC583_0219 FALSE 0.09 247 0
 1976512 1976513 BARBAKC583_0219 BARBAKC583_0220 FALSE 0.096 243 0
 1976513 1976514 BARBAKC583_0220 BARBAKC583_0221 FALSE 0.055 311 0
 1976514 1976515 BARBAKC583_0221 BARBAKC583_0222 FALSE 0.127 210 0
 1976515 1976516 BARBAKC583_0222 BARBAKC583_0223 TRUE 0.623 -31 0
 1976516 1976517 BARBAKC583_0223 BARBAKC583_0224 FALSE 0.085 253 0
 1976517 1976518 BARBAKC583_0224 BARBAKC583_0225 FALSE 0.009 1000 0
 1976518 1976519 BARBAKC583_0225 BARBAKC583_0226 FALSE 0.008 1280 0
 1976519 1976520 BARBAKC583_0226 BARBAKC583_0227 FALSE 0 1164 0.017
 1976520 1976521 BARBAKC583_0227 BARBAKC583_0228 FALSE 0.084 736 7.327
 1976521 1976522 BARBAKC583_0228 BARBAKC583_0229 FALSE 0.015 586 0
 1976522 1976523 BARBAKC583_0229 BARBAKC583_0230 FALSE 0.07 282 0
 1976523 1976524 BARBAKC583_0230 BARBAKC583_0231 FALSE 0.328 79 0
 1976524 1976525 BARBAKC583_0231 BARBAKC583_0232 FALSE 0.124 215 0
 1976525 1976526 BARBAKC583_0232 BARBAKC583_0233 FALSE 0.187 169 0
 1976526 1976527 BARBAKC583_0233 BARBAKC583_0234 TRUE 0.793 -3 0
 1976527 1976528 BARBAKC583_0234 BARBAKC583_0235 TRUE 0.793 -3 0
 1976528 1976529 BARBAKC583_0235 BARBAKC583_0236 TRUE 0.842 0 0
 1976529 1976530 BARBAKC583_0236 BARBAKC583_0237 TRUE 0.842 0 0
 1976530 1976531 BARBAKC583_0237 BARBAKC583_0238 TRUE 0.842 0 0
 1976531 1976532 BARBAKC583_0238 BARBAKC583_0239 FALSE 0.001 390 -3.361
 1976532 1976533 BARBAKC583_0239 BARBAKC583_0240 TRUE 0.829 57 0.035
 1976533 1976534 BARBAKC583_0240 BARBAKC583_0241 TRUE 0.793 -3 0
 1976534 1976535 BARBAKC583_0241 BARBAKC583_0242 TRUE 0.722 -7 0
 1976535 1976536 BARBAKC583_0242 BARBAKC583_0243 FALSE 0.018 511 0
 1976536 1976537 BARBAKC583_0243 BARBAKC583_0244 FALSE 0.044 344 0
 1976537 1976538 BARBAKC583_0244 BARBAKC583_0245 FALSE 0.486 55 0
 1976538 1976539 BARBAKC583_0245 BARBAKC583_0246 FALSE 0.174 180 0
 1976539 1976540 BARBAKC583_0246 BARBAKC583_0247 FALSE 0.14 200 0
 1976541 1976542 BARBAKC583_0248 BARBAKC583_0249 FALSE 0.006 217 -11.825
 1976542 1976543 BARBAKC583_0249 BARBAKC583_0250 TRUE 0.989 0 7.565
 1976544 1976545 BARBAKC583_0251 BARBAKC583_0252 TRUE 0.633 -25 0
 1976545 1976546 BARBAKC583_0252 BARBAKC583_0253 TRUE 0.793 -3 0
 1976546 1976547 BARBAKC583_0253 BARBAKC583_0254 TRUE 0.842 0 0
 1976547 1976548 BARBAKC583_0254 BARBAKC583_0255 FALSE 0.083 257 0
 1976549 1976550 BARBAKC583_0256 BARBAKC583_0257 FALSE 0.352 126 0
 1976551 1976552 BARBAKC583_0258