VIMSS Operon Predictions for Buchnera aphidicola str. Cc

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2016605 2016606 BCc_002 BCc_003 gyrB dnaN TRUE 0.844 161 285.493
 2016606 2016607 BCc_003 BCc_004 dnaN dnaA TRUE 0.998 6 848.564
 2016608 2016609 BCc_005 BCc_006 rpmH rnpA TRUE 0.98 23 153.37
 2016609 2016610 BCc_006 BCc_007 rnpA yidC FALSE 0.295 408 1.291
 2016610 2016611 BCc_007 BCc_008 yidC thdF TRUE 0.624 75 10.119
 2016612 2016613 BCc_010 BCc_011 groES groEL TRUE 0.997 55 1638.49
 2016613 2016614 BCc_011 BCc_012 groEL efp FALSE 0.141 139 -44.675
 2016615 2016616 BCc_013 BCc_014 dnaC yhhF FALSE 0.212 205 -8.409
 2016617 2016618 BCc_015 BCc_016 ftsY rpoH FALSE 0.198 73 -1.713
 2016618 2016619 BCc_016 BCc_017 rpoH metE FALSE 0.01 272 -28.848
 2016620 2016621 BCc_018 BCc_019 rpoC rpoB TRUE 0.983 82 1099.707
 2016621 2016622 BCc_019 BCc_020 rpoB rplL TRUE 0.91 227 999.158
 2016622 2016623 BCc_020 BCc_021 rplL rplJ TRUE 0.99 52 1197.428
 2016623 2016624 BCc_021 BCc_022 rplJ rplA TRUE 0.96 172 1019.478
 2016624 2016625 BCc_022 BCc_023 rplA rplK TRUE 0.998 3 1862.146
 2016625 2016626 BCc_023 BCc_024 rplK nusG TRUE 0.984 51 1445.349
 2016626 2016627 BCc_024 BCc_025 nusG secE TRUE 0.991 3 294.198
 2016627 1396318 BCc_025 BCc_026 secE trnT FALSE 0.095 198 0
 1396318 1396319 BCc_026 BCc_027 trnT trnG FALSE 0.261 54 0
 1396319 1396320 BCc_027 BCc_028 trnG trnY TRUE 0.676 13 0
 1396320 1396321 BCc_028 BCc_029 trnY trnT TRUE 0.681 11 0
 2016628 2016629 BCc_030 BCc_031 metF argB FALSE 0.289 183 -31.423
 2016629 2016630 BCc_031 BCc_032 argB argG TRUE 0.989 29 51.139
 2016630 2016631 BCc_032 BCc_033 argG argH TRUE 0.999 33 566.206
 2016632 2016633 BCc_034 BCc_035 rpoD danG TRUE 0.882 165 317.124
 2016633 2016634 BCc_035 BCc_036 danG rpsU TRUE 0.808 72 215.848
 2016635 2016636 BCc_037 BCc_038 gcp cca FALSE 0.133 120 -39.846
 2016636 2016637 BCc_038 BCc_039 cca lig FALSE 0.01 637 -26.262
 1396332 1396333 BCc_040 BCc_041 trnK trnV TRUE 0.656 18 0
 2016638 2016639 BCc_042 BCc_043 gltX fliF FALSE 0.01 620 -5.634
 2016639 2016640 BCc_043 BCc_044 fliF fliG TRUE 0.991 -3 106.107
 2016640 2016641 BCc_044 BCc_045 fliG fliH TRUE 0.979 15 14.315
 2016641 2016642 BCc_045 BCc_046 fliH fliI TRUE 0.989 6 17.665
 2016642 2016643 BCc_046 BCc_047 fliI fliN FALSE 0.01 1422 -10.361
 2016643 2016644 BCc_047 BCc_048 fliN fliP TRUE 0.572 165 11.938
 2016644 2016645 BCc_048 BCc_049 fliP fliQ TRUE 0.999 40 593.1
 2016645 2016646 BCc_049 BCc_050 fliQ fliR TRUE 0.997 6 431.251
 2016647 2016648 BCc_051 BCc_052 rpmG rpmB TRUE 0.993 12 615.002
 2016648 2016649 BCc_052 BCc_053 rpmB ppa FALSE 0.01 115 -34.206
 2016649 1396346 BCc_053 BCc_054 ppa rnpB FALSE 0.095 1199 0
 1396346 2016650 BCc_054 BCc_055 rnpB yraL TRUE 0.565 33 0
 2016651 2016652 BCc_056 BCc_057 fabB talA FALSE 0.01 197 -19.339
 2016652 2016653 BCc_057 BCc_058 talA tktB TRUE 0.971 47 55.498
 2016653 2016654 BCc_058 BCc_059 tktB dapE FALSE 0.01 90 -25.156
 2016655 2016656 BCc_060 BCc_061 dapA aroC FALSE 0.343 256 -36.452
 2016657 2016658 BCc_062 BCc_063 yfcN hisG FALSE 0.01 289 -15.461
 2016658 2016659 BCc_063 BCc_064 hisG hisD TRUE 0.999 8 406.926
 2016659 2016660 BCc_064 BCc_065 hisD hisC TRUE 0.999 36 617.124
 2016660 2016661 BCc_065 BCc_066 hisC hisB TRUE 0.999 2 271.05
 2016661 2016662 BCc_066 BCc_067 hisB hisH TRUE 0.999 1 283.128
 2016662 2016663 BCc_067 BCc_068 hisH hisA TRUE 1 5 1272.378
 2016663 2016664 BCc_068 BCc_069 hisA hisF TRUE 1 -18 1173.66
 2016664 2016665 BCc_069 BCc_070 hisF hisI TRUE 0.999 -6 520.285
 2016665 2016666 BCc_070 BCc_071 hisI gnsD FALSE 0.371 65 5.295
 2016666 2016667 BCc_071 BCc_072 gnsD metG FALSE 0.01 195 -20.569
 2016668 1396366 BCc_073 BCc_074 mesJ trnV TRUE 0.6 26 0
 2016671 2016672 BCc_077 BCc_078 aroH thrS FALSE 0.01 141 -26.839
 2016672 2016673 BCc_078 BCc_079 thrS infC TRUE 0.998 4 723.603
 2016673 2016674 BCc_079 BCc_080 infC rpmI TRUE 0.975 62 1048.158
 2016674 2016675 BCc_080 BCc_081 rpmI rplT TRUE 0.995 44 1725.131
 2016675 2016676 BCc_081 BCc_082 rplT pheS TRUE 0.958 111 730.873
 2016676 2016677 BCc_082 BCc_083 pheS pheT TRUE 1 16 1378.391
 2016677 2016678 BCc_083 BCc_084 pheT himA TRUE 0.994 7 463.687
 2016679 2016680 BCc_085 BCc_086 glyS glyQ TRUE 1 4 1087.952
 2016681 2016682 BCc_087 BCc_088 nfo rplY FALSE 0.01 119 -14.371
 2016682 2016683 BCc_088 BCc_089 rplY ksgA FALSE 0.169 499 -24.589
 2016684 2016685 BCc_090 BCc_091 carB carA TRUE 1 -21 1179.84
 2016685 2016686 BCc_091 BCc_092 carA dapB TRUE 0.88 83 199.888
 2016686 2016687 BCc_092 BCc_093 dapB ileS FALSE 0.129 151 -46.52
 2016689 2016690 BCc_095 BCc_096 dnaJ dnaK TRUE 0.974 134 1381.406
 2016691 2016692 BCc_097 BCc_098 nuoA nuoB TRUE 0.959 125 50.842
 2016692 2016693 BCc_098 BCc_099 nuoB nuoCD TRUE 0.975 171 159.707
 2016693 2016694 BCc_099 BCc_100 nuoCD nuoE TRUE 0.998 32 145.362
 2016694 2016695 BCc_100 BCc_101 nuoE nuoF TRUE 0.999 -3 405.878
 2016695 2016696 BCc_101 BCc_102 nuoF nuoG TRUE 0.975 123 167.534
 2016696 2016697 BCc_102 BCc_103 nuoG nuoH TRUE 0.998 27 191.024
 2016697 2016698 BCc_103 BCc_104 nuoH nuoI TRUE 0.999 16 339.53
 2016698 2016699 BCc_104 BCc_105 nuoI nuoJ TRUE 0.999 17 189.632
 2016699 2016700 BCc_105 BCc_106 nuoJ nuoK TRUE 0.999 36 438.804
 2016700 2016701 BCc_106 BCc_107 nuoK nuoL TRUE 0.999 -3 628.294
 2016701 2016702 BCc_107 BCc_108 nuoL nuoM TRUE 0.989 306 617.809
 2016702 2016703 BCc_108 BCc_109 nuoM nuoN TRUE 1 16 958.66
 2016705 2016706 BCc_111 BCc_112 prfA hemK TRUE 0.998 23 1106.454
 2016706 2016707 BCc_112 BCc_113 hemK ychA TRUE 0.863 39 144.592
 2016707 2016708 BCc_113 BCc_114 ychA ackA FALSE 0.009 100 -13.597
 2016708 2016709 BCc_114 BCc_115 ackA pta TRUE 0.88 91 106.393
 2016710 2016711 BCc_116 BCc_117 gyrA ahpC FALSE 0.078 196 -37.135
 2016713 1396412 BCc_119 BCc_120 grpE ssrA FALSE 0.095 169 0
 2016716 2016717 BCc_123 BCc_124 pth ychF TRUE 0.979 56 485.804
 2016718 2016719 BCc_125 BCc_126 thrC thrB TRUE 0.996 -13 289.898
 2016719 2016720 BCc_126 BCc_127 thrB thrA TRUE 0.995 20 249.973
 2016720 2016721 BCc_127 BCc_128 thrA pcnB FALSE 0.01 402 -15.848
 2016722 2016723 BCc_129 BCc_130 truA secA FALSE 0.214 337 -39.917
 2016723 2016724 BCc_130 BCc_131 secA aceE FALSE 0.075 486 -37.989
 2016724 2016725 BCc_131 BCc_132 aceE aceF TRUE 0.995 12 225.291
 2016725 2016726 BCc_132 BCc_133 aceF lpdA TRUE 0.926 86 307.259
 2016727 2016728 BCc_134 BCc_135 yadR ftsZ FALSE 0.01 189 -28.362
 2016728 2016729 BCc_135 BCc_136 ftsZ ftsA TRUE 0.974 66 940.537
 2016729 2016730 BCc_136 BCc_137 ftsA yabC FALSE 0.418 475 -46.312
 2016730 2016731 BCc_137 BCc_138 yabC ilvH FALSE 0.01 149 -30.313
 2016731 2016732 BCc_138 BCc_139 ilvH ilvI TRUE 0.998 10 1209.289
 2016732 2016733 BCc_139 BCc_140 ilvI dapD FALSE 0.186 159 -29.999
 2016733 2016734 BCc_140 BCc_141 dapD map FALSE 0.092 141 -13.13
 2016735 2016736 BCc_142 BCc_143 rpsB tsf TRUE 0.988 57 1452.328
 2016736 2016737 BCc_143 BCc_144 tsf pyrH TRUE 0.938 98 996.921
 2016737 2016738 BCc_144 BCc_145 pyrH frr TRUE 0.976 55 1683.927
 2016738 2016739 BCc_145 BCc_146 frr yaeT FALSE 0.095 173 0
 2016739 2016740 BCc_146 BCc_147 yaeT fabZ FALSE 0.111 70 0
 2016740 2016741 BCc_147 BCc_148 fabZ dnaE FALSE 0.145 128 -36.048
 2016743 2016744 BCc_150 BCc_151 flhB flhA TRUE 0.999 10 506.217
 1396445 1396446 BCc_153 BCc_154 rrs trnI FALSE 0.094 118 0
 1396446 1396447 BCc_154 BCc_155 trnI trnA TRUE 0.673 14 0
 1396447 2016746 BCc_155 BCc_156 trnA dnaQ FALSE 0.092 88 0
 2016746 1396449 BCc_156 BCc_157 dnaQ trnD FALSE 0.092 90 0
 1396449 2016747 BCc_157 BCc_158 trnD grpE1 FALSE 0.094 121 0
 2016747 2016748 BCc_158 BCc_159 grpE1 smpB FALSE 0.013 66 -23.41
 2016748 2016749 BCc_159 BCc_160 smpB tadA FALSE 0.058 46 -34.909
 2016750 2016751 BCc_161 BCc_162 acpS era TRUE 0.804 -25 -13.009
 2016751 2016752 BCc_162 BCc_163 era rnc TRUE 0.996 6 672.958
 2016752 2016753 BCc_163 BCc_164 rnc lepB TRUE 0.913 84 596.345
 2016753 2016754 BCc_164 BCc_165 lepB lepA TRUE 0.993 21 499.561
 2016755 2016756 BCc_166 BCc_167 trmU fabI FALSE 0.033 232 -31.227
 2016756 2016757 BCc_167 BCc_168 fabI rnb FALSE 0.474 211 24.678
 2016757 2016758 BCc_168 BCc_169 rnb lipB FALSE 0.009 93 -18.185
 2016758 2016759 BCc_169 BCc_170 lipB lipA TRUE 0.985 77 440.98
 2016760 2016761 BCc_171 BCc_172 sppA yciA FALSE 0.01 177 -14.467
 2016761 2016762 BCc_172 BCc_173 yciA yciC FALSE 0.207 102 34.695
 2016765 2016766 BCc_176 BCc_177 yfgB hisS FALSE 0.341 82 -30.12
 2016766 2016767 BCc_177 BCc_178 hisS glyA FALSE 0.076 113 -38.253
 2016768 2016769 BCc_179 BCc_180 pgl mfd FALSE 0.398 60 0.108
 2016772 2016773 BCc_183 BCc_184 ybgI sucA FALSE 0.095 246 0
 2016773 2016774 BCc_184 BCc_185 sucA sucB TRUE 0.999 6 1017.924
 2016774 2016775 BCc_185 BCc_186 sucB gpmA FALSE 0.01 290 -23.015
 2016775 2016776 BCc_186 BCc_187 gpmA pfkA TRUE 0.665 122 -17.848
 2016777 2016778 BCc_188 BCc_189 tpiA himD FALSE 0.01 109 -22.367
 2016778 2016779 BCc_189 BCc_190 himD rpsA TRUE 0.977 49 479.749
 2016779 2016780 BCc_190 BCc_191 rpsA aroA TRUE 0.773 240 312.504
 2016780 2016781 BCc_191 BCc_192 aroA serC TRUE 0.904 67 81.45
 2016781 2016782 BCc_192 BCc_193 serC serS FALSE 0.009 95 -27.908
 2016783 2016784 BCc_194 BCc_195 trxB infA TRUE 0.699 15 -35.369
 2016784 2016785 BCc_195 BCc_196 infA aspS FALSE 0.24 62 -34.961
 2016785 2016786 BCc_196 BCc_197 aspS yebC TRUE 0.782 105 183.579
 2016788 2016789 BCc_199 BCc_200 zwf htpX FALSE 0.01 140 -19.256
 2016789 2016790 BCc_200 BCc_201 htpX yoaE FALSE 0.01 323 -14.686
 2016790 2016791 BCc_201 BCc_202 yoaE yeaZ FALSE 0.166 0 -15.611
 2016792 2016793 BCc_203 BCc_204 minE minD TRUE 0.997 6 500.825
 2016793 2016794 BCc_204 BCc_205 minD minC TRUE 0.993 36 276.143
 1396499 1396500 BCc_207 BCc_208 trnL trnC TRUE 0.579 32 0
 2016797 2016798 BCc_211 BCc_212 flgF flgH FALSE 0.465 269 0.078
 2016798 2016799 BCc_212 BCc_213 flgH flgI FALSE 0.489 66 0
 2016799 2016800 BCc_213 BCc_214 flgI rluC FALSE 0.01 155 -0.404
 2016800 2016801 BCc_214 BCc_215 rluC rpmF FALSE 0.383 72 -26.151
 2016801 2016802 BCc_215 BCc_216 rpmF fabD FALSE 0.207 259 -9.65
 2016802 2016803 BCc_216 BCc_217 fabD fabG TRUE 0.999 -3 649.076
 2016803 2016804 BCc_217 BCc_218 fabG acpP TRUE 0.994 67 948.597
 2016804 2016805 BCc_218 BCc_219 acpP holB FALSE 0.253 9 -18.671
 2016805 2016806 BCc_219 BCc_220 holB ycfH TRUE 0.956 43 159.034
 2016807 2016808 BCc_221 BCc_222 asnS yceA FALSE 0.01 137 -25.052
 2016808 2016809 BCc_222 BCc_223 yceA valS FALSE 0.038 52 -19.373
 2016810 2016811 BCc_224 BCc_225 argF yhaR FALSE 0.038 52 -35.176
 2016812 2016813 BCc_226 BCc_227 deaD pnp FALSE 0.478 282 -17.489
 2016813 2016814 BCc_227 BCc_228 pnp rpsO TRUE 0.961 196 1293.922
 2016814 2016815 BCc_228 BCc_229 rpsO truB TRUE 0.951 62 270.02
 2016815 2016816 BCc_229 BCc_230 truB rbfA TRUE 0.991 49 500.132
 2016816 2016817 BCc_230 BCc_231 rbfA infB TRUE 0.959 78 549.862
 2016817 2016818 BCc_231 BCc_232 infB nusA TRUE 0.879 240 416.626
 2016818 1396525 BCc_232 BCc_233 nusA trnL FALSE 0.095 286 0
 1396525 2016819 BCc_233 BCc_234 trnL secG FALSE 0.095 152 0
 2016819 2016820 BCc_234 BCc_235 secG hflB FALSE 0.095 434 0
 2016820 2016821 BCc_235 BCc_236 hflB ftsJ TRUE 0.95 55 484.501
 2016821 2016822 BCc_236 BCc_237 ftsJ greA TRUE 0.574 271 173.098
 2016823 2016824 BCc_238 BCc_239 yrbA rplU FALSE 0.01 337 -27.705
 2016824 2016825 BCc_239 BCc_240 rplU rpmA TRUE 0.995 39 1463.265
 2016825 2016826 BCc_240 BCc_241 rpmA yhbZ TRUE 0.976 45 705.482
 2016827 2016828 BCc_242 BCc_243 rpsI rplM TRUE 0.997 33 1866.985
 2016829 2016830 BCc_244 BCc_245 pheA ffh FALSE 0.01 85 -23.681
 2016830 2016831 BCc_245 BCc_246 ffh rpsP TRUE 0.965 55 606.19
 2016831 2016832 BCc_246 BCc_247 rpsP rimM TRUE 0.997 18 636.267
 2016832 2016833 BCc_247 BCc_248 rimM trmD TRUE 0.998 12 755.256
 2016833 2016834 BCc_248 BCc_249 trmD rplS TRUE 0.968 71 1244.2
 2016836 2016837 BCc_252 BCc_253 fis rluD FALSE 0.01 82 -14.512
 2016838 2016839 BCc_254 BCc_255 alaS csrA TRUE 0.768 110 104.298
 2016839 1396548 BCc_255 BCc_256 csrA trnS FALSE 0.095 198 0
 1396548 1396549 BCc_256 BCc_257 trnS trnR TRUE 0.633 21