VIMSS Operon Predictions for Baumannia cicadellinicola str. Hc

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2022994 2022995 BCI_0001 BCI_0002 mqo purL FALSE 0.002 213 -15.312
 2022995 2022996 BCI_0002 BCI_0003 purL TRUE 0.653 54 -52.812
 2022996 2022997 BCI_0003 BCI_0004 glyA FALSE 0.035 213 -61.959
 2022999 2023000 BCI_0006 BCI_0007 iscS ndk TRUE 0.776 33 -55.955
 2023000 2023001 BCI_0007 BCI_0008 ndk ispG FALSE 0.15 348 -69.996
 2023001 2023002 BCI_0008 BCI_0009 ispG hisS TRUE 0.996 23 351.212
 2023002 2023003 BCI_0009 BCI_0010 hisS FALSE 0.45 113 306.653
 2023003 2023004 BCI_0010 BCI_0011 engA TRUE 0.998 19 466.045
 2023004 2023005 BCI_0011 BCI_0012 engA pgi FALSE 0.017 98 -50.556
 2023007 2023008 BCI_0014 BCI_0015 nudE metK FALSE 0.004 184 -39.167
 2023010 2023011 BCI_0017 BCI_0018 metE FALSE 0.01 275 -40.439
 2023012 2023013 BCI_0019 BCI_0020 metA plsB FALSE 0.002 254 -31.667
 2023013 2023014 BCI_0020 BCI_0021 plsB trpS FALSE 0.002 178 -31.731
 2023014 2023015 BCI_0021 BCI_0022 trpS rpe FALSE 0.321 80 78.694
 2023015 2023016 BCI_0022 BCI_0023 rpe aroB FALSE 0.118 94 -66.753
 2023016 2023017 BCI_0023 BCI_0024 aroB aroK TRUE 1 5 762.214
 2023017 2023018 BCI_0024 BCI_0025 aroK pssA FALSE 0.003 287 -25.839
 2023018 2023019 BCI_0025 BCI_0026 pssA FALSE 0.002 181 -25.969
 2023020 2023021 BCI_0027 BCI_0028 murA TRUE 0.929 68 325.604
 2023022 2023023 BCI_0029 BCI_0030 degQ FALSE 0.285 95 47.129
 2023024 2023025 BCI_0031 BCI_0032 rplM rpsI TRUE 1 20 1698.695
 2023025 2023026 BCI_0032 BCI_0033 rpsI FALSE 0.005 460 -22.659
 2023026 1394421 BCI_0033 BCI_0034 FALSE 0.042 511 0
 1394421 2023027 BCI_0034 BCI_0035 purH FALSE 0.039 143 0
 2023027 2023028 BCI_0035 BCI_0036 purH purD TRUE 0.999 21 466.806
 2023029 2023030 BCI_0037 BCI_0038 FALSE 0.085 117 -25.438
 2023030 2023031 BCI_0038 BCI_0039 nuc TRUE 0.644 23 -0.165
 2023031 2023032 BCI_0039 BCI_0040 nuc hup FALSE 0.01 102 -1.156
 2023033 2023034 BCI_0041 BCI_0042 thiC thiE TRUE 0.99 -13 83.916
 2023034 2023035 BCI_0042 BCI_0043 thiE thiF TRUE 0.982 -7 27.166
 2023035 2023036 BCI_0043 BCI_0044 thiF thiS TRUE 0.986 0 49.705
 2023036 2023037 BCI_0044 BCI_0045 thiS thiG TRUE 0.996 4 222.188
 2023037 2023038 BCI_0045 BCI_0046 thiG thiH TRUE 0.996 -3 254.091
 2023039 2023040 BCI_0047 BCI_0048 mreD mreC TRUE 0.693 159 209.987
 2023040 2023041 BCI_0048 BCI_0049 mreC mreB TRUE 0.998 35 553.743
 2023042 2023043 BCI_0050 BCI_0051 aroQ accB TRUE 0.998 22 462.796
 2023043 2023044 BCI_0051 BCI_0052 accB accC TRUE 1 9 1187.59
 2023048 2023049 BCI_0056 BCI_0057 ftsY ftsE TRUE 0.976 13 65.304
 2023049 2023050 BCI_0057 BCI_0058 ftsE ftsX TRUE 0.998 20 392.006
 2023050 2023051 BCI_0058 BCI_0059 ftsX rpoH TRUE 0.855 63 136.937
 2023051 2023052 BCI_0059 BCI_0060 rpoH ubiB FALSE 0.002 173 -30.952
 2023052 2023053 BCI_0060 BCI_0061 ubiB hemC FALSE 0.057 135 -36.787
 2023053 2023054 BCI_0061 BCI_0062 hemC hemD TRUE 0.997 8 218.997
 2023055 2023056 BCI_0063 BCI_0064 lnt TRUE 0.907 46 137.329
 2023056 2023057 BCI_0064 BCI_0065 miaB TRUE 0.84 40 -22.319
 2023057 2023058 BCI_0065 BCI_0066 miaB ligA FALSE 0.028 188 -48.668
 2023058 2023059 BCI_0066 BCI_0067 ligA zipA FALSE 0.447 64 4.819
 2023060 2023061 BCI_0068 BCI_0069 cysK ptsH FALSE 0.051 174 33.965
 2023061 2023062 BCI_0069 BCI_0070 ptsH ptsI TRUE 0.993 53 594.424
 2023064 2023065 BCI_0072 BCI_0073 purM purN TRUE 1 -9 850.118
 2023065 2023066 BCI_0073 BCI_0074 purN ppk FALSE 0.093 211 -3.803
 2023067 2023068 BCI_0075 BCI_0076 tktA talB TRUE 0.886 21 -7.513
 2023069 2023070 BCI_0077 BCI_0078 cysT cysW TRUE 0.999 9 528.489
 2023070 2023071 BCI_0078 BCI_0079 cysW cysA TRUE 0.997 3 232.393
 2023071 2023072 BCI_0079 BCI_0080 cysA rnfB FALSE 0.028 273 0
 2023073 2023074 BCI_0081 BCI_0082 tyrS pdxH TRUE 0.892 36 20.788
 2023074 2023075 BCI_0082 BCI_0083 pdxH slyA FALSE 0.008 234 -39.369
 2023075 2023076 BCI_0083 BCI_0084 slyA FALSE 0.085 92 0
 2023078 2023079 BCI_0086 BCI_0087 ribE FALSE 0.018 206 -49.646
 1394475 2023080 BCI_0088 BCI_0089 FALSE 0.035 168 0
 1394477 1394478 BCI_0090 BCI_0091 TRUE 0.827 13 0
 1394478 1394479 BCI_0091 BCI_0092 TRUE 0.836 9 0
 1394479 1394480 BCI_0092 BCI_0093 FALSE 0.424 52 0
 2023083 2023084 BCI_0096 BCI_0097 sucC FALSE 0.048 355 -51.181
 2023084 2023085 BCI_0097 BCI_0098 sucC sucD TRUE 1 -12 1183.554
 2023085 1394486 BCI_0098 BCI_0099 sucD FALSE 0.044 1071 0
 1394486 2023086 BCI_0099 BCI_0100 pal TRUE 0.642 41 0
 2023086 2023087 BCI_0100 BCI_0101 pal TRUE 0.932 15 3.323
 2023087 2023088 BCI_0101 BCI_0102 nadA FALSE 0.374 58 0.075
 2023089 2023090 BCI_0103 BCI_0104 tilS FALSE 0.248 9 -27.881
 2023090 2023091 BCI_0104 BCI_0105 FALSE 0.048 380 -31.048
 2023091 2023092 BCI_0105 BCI_0106 troB TRUE 0.998 2 306.754
 2023092 2023093 BCI_0106 BCI_0107 troB ssb FALSE 0.028 85 -9.921
 1394495 2023094 BCI_0108 BCI_0109 gltP FALSE 0.043 640 0
 2023094 2023095 BCI_0109 BCI_0110 gmk FALSE 0.008 247 -5.866
 2023095 2023096 BCI_0110 BCI_0111 gmk rpoZ TRUE 0.909 73 348.847
 2023096 2023097 BCI_0111 BCI_0112 rpoZ recG FALSE 0.09 297 -10.252
 2023097 2023098 BCI_0112 BCI_0113 recG FALSE 0.175 58 -46.009
 2023100 2023101 BCI_0115 BCI_0116 dnaX FALSE 0.177 275 25.465
 2023101 2023102 BCI_0116 BCI_0117 htpG FALSE 0.067 178 25.618
 2023102 2023103 BCI_0117 BCI_0118 htpG adk FALSE 0.284 97 59
 2023104 2023105 BCI_0119 BCI_0120 purK purE TRUE 1 -3 1157.774
 1394510 1394511 BCI_0123 BCI_0124 cyaA FALSE 0.043 126 0
 1394511 2023108 BCI_0124 BCI_0125 cyaA dapF FALSE 0.147 79 0
 2023108 2023109 BCI_0125 BCI_0126 dapF FALSE 0.052 113 -45.449
 2023109 2023110 BCI_0126 BCI_0127 uvrD TRUE 0.687 55 31.935
 2023110 2023111 BCI_0127 BCI_0128 uvrD corA FALSE 0.004 447 -29.576
 2023114 2023115 BCI_0131 BCI_0132 gyrB dnaN TRUE 0.597 158 215.921
 2023116 2023117 BCI_0133 BCI_0134 rpmH rnpA TRUE 0.998 12 302.062
 2023117 2023118 BCI_0134 BCI_0135 rnpA TRUE 0.988 -24 107.423
 2023118 2023119 BCI_0135 BCI_0136 TRUE 0.992 3 163.689
 2023119 2023120 BCI_0136 BCI_0137 trmE TRUE 0.997 -3 368.892
 2023121 2023122 BCI_0138 BCI_0139 glmS glmU TRUE 0.996 43 390.514
 2023122 2023123 BCI_0139 BCI_0140 glmU atpC TRUE 0.901 54 129.352
 2023123 2023124 BCI_0140 BCI_0141 atpC atpD TRUE 1 14 1124.487
 2023124 2023125 BCI_0141 BCI_0142 atpD atpG TRUE 1 46 1444.034
 2023125 2023126 BCI_0142 BCI_0143 atpG atpA TRUE 1 47 1665.919
 2023126 2023127 BCI_0143 BCI_0144 atpA atpH TRUE 1 22 1299.335
 2023127 2023128 BCI_0144 BCI_0145 atpH atpF TRUE 1 23 940.699
 2023128 2023129 BCI_0145 BCI_0146 atpF atpE TRUE 0.999 29 840.749
 2023129 2023130 BCI_0146 BCI_0147 atpE atpB TRUE 1 37 1034.491
 2023130 2023131 BCI_0147 BCI_0148 atpB gidA FALSE 0.308 88 -70.4
 2023131 2023132 BCI_0148 BCI_0149 gidA gcvT FALSE 0.164 47 -39.504
 2023133 1394538 BCI_0150 BCI_0151 recJ prfB TRUE 0.736 31 0
 1394538 2023134 BCI_0151 BCI_0152 prfB lysS TRUE 0.836 9 0
 2023134 2023135 BCI_0152 BCI_0153 lysS murI FALSE 0.399 54 -46.212
 2023135 1394541 BCI_0153 BCI_0509 murI rrsB FALSE 0.035 271 0
 1394541 1394542 BCI_0509 BCI_0508 rrsB FALSE 0.048 114 0
 1394542 1394543 BCI_0508 BCI_0507 rrlB FALSE 0.113 85 0
 1394543 1394544 BCI_0507 BCI_0506 rrlB rrfB TRUE 0.716 33 0
 1394544 1394545 BCI_0506 BCI_0158 rrfB TRUE 0.8 21 0
 1394545 1394546 BCI_0158 BCI_0159 TRUE 0.777 24 0
 2023136 2023137 BCI_0160 BCI_0161 glyS glyQ TRUE 1 6 937.562
 2023137 2023138 BCI_0161 BCI_0162 glyQ metF FALSE 0.013 731 -45.738
 2023138 2023139 BCI_0162 BCI_0163 metF metB FALSE 0.086 181 -55.297
 2023141 2023142 BCI_0166 BCI_0167 priA hslV FALSE 0.053 225 -52.482
 2023142 2023143 BCI_0167 BCI_0168 hslV hslU TRUE 1 4 1023.201
 2023143 2023144 BCI_0168 BCI_0169 hslU tpiA FALSE 0.042 263 -62.328
 2023145 2023146 BCI_0170 BCI_0171 pfkA FALSE 0.262 71 28.33
 2023146 2023147 BCI_0171 BCI_0172 pfkA cysE FALSE 0.004 247 -33.12
 2023147 2023148 BCI_0172 BCI_0173 cysE gpsA TRUE 0.869 51 85.447
 2023148 2023149 BCI_0173 BCI_0174 gpsA FALSE 0.291 386 154.27
 2023150 2023151 BCI_0175 BCI_0176 coaD FALSE 0.018 272 -47.076
 2023152 2023153 BCI_0177 BCI_0178 mutM rpmG TRUE 0.724 61 56.232
 2023153 2023154 BCI_0178 BCI_0179 rpmG rpmB TRUE 0.991 50 459.799
 2023154 2023155 BCI_0179 BCI_0180 rpmB FALSE 0.082 99 -52.404
 2023157 2023158 BCI_0182 BCI_0183 dut dfp TRUE 0.998 -19 458.043
 2023158 1394571 BCI_0183 BCI_0184 dfp FALSE 0.033 208 0
 1394571 1394572 BCI_0184 BCI_0185 FALSE 0.087 91 0
 1394572 1394573 BCI_0185 BCI_0186 TRUE 0.785 23 0
 1394573 1394574 BCI_0186 BCI_0187 TRUE 0.811 18 0
 1394574 2023159 BCI_0187 BCI_0188 rho FALSE 0.034 250 0
 2023159 2023160 BCI_0188 BCI_0189 rho trxA TRUE 0.747 94 333.346
 2023160 2023161 BCI_0189 BCI_0190 trxA FALSE 0.003 124 -31.025
 2023164 2023165 BCI_0193 BCI_0194 rluD clpB FALSE 0.169 139 87.823
 2023166 2023167 BCI_0195 BCI_0196 rplS trmD TRUE 1 17 1094.378
 2023167 2023168 BCI_0196 BCI_0197 trmD rimM TRUE 1 25 904.665
 2023168 2023169 BCI_0197 BCI_0198 rimM rpsP TRUE 0.999 -10 584.852
 2023169 2023170 BCI_0198 BCI_0199 rpsP ffh TRUE 0.936 97 494.736
 2023172 1394589 BCI_0201 BCI_0202 gshA FALSE 0.035 172 0
 1394589 1394590 BCI_0202 BCI_0203 TRUE 0.838 8 0
 1394590 2023173 BCI_0203 BCI_0204 csrA FALSE 0.033 198 0
 2023173 2023174 BCI_0204 BCI_0205 csrA alaS FALSE 0.216 182 56.385
 2023174 2023175 BCI_0205 BCI_0206 alaS recA TRUE 0.605 248 319.601
 2023176 2023177 BCI_0207 BCI_0208 TRUE 0.998 27 448.764
 2023177 2023178 BCI_0208 BCI_0209 mutS FALSE 0.007 87 -32.122
 2023179 2023180 BCI_0210 BCI_0211 ispF ispD TRUE 0.999 10 590.164
 2023180 2023181 BCI_0211 BCI_0212 ispD cysC FALSE 0.049 315 6.603
 2023181 2023182 BCI_0212 BCI_0213 cysC cysN TRUE 0.991 -3 83.549
 2023182 2023183 BCI_0213 BCI_0214 cysN cysD TRUE 0.997 13 411.747
 2023183 2023184 BCI_0214 BCI_0215 cysD cysG TRUE 0.934 44 25.94
 2023184 2023185 BCI_0215 BCI_0216 cysG cysH FALSE 0.153 168 0.174
 2023185 2023186 BCI_0216 BCI_0217 cysH cysI TRUE 0.998 14 417.341
 2023186 2023187 BCI_0217 BCI_0218 cysI cysJ TRUE 0.996 0 190.549
 2023189 2023190 BCI_0220 BCI_0221 eno FALSE 0.453 41 -38.747
 2023190 2023191 BCI_0221 BCI_0222 eno pyrG TRUE 0.895 68 238.336
 2023191 1394610 BCI_0222 BCI_0223 pyrG relA FALSE 0.054 109 0
 2023193 1394613 BCI_0225 BCI_0226 mrcB FALSE 0.044 831 0
 2023194 2023195 BCI_0227 BCI_0228 dksA pcnB FALSE 0.028 510 -22.368
 2023195 2023196 BCI_0228 BCI_0229 pcnB folK TRUE 0.976 26 109.265
 2023196 2023197 BCI_0229 BCI_0230 folK panB TRUE 0.963 57 234.995
 2023197 2023198 BCI_0230 BCI_0231 panB panC TRUE 1 19 699.377
 2023198 2023199 BCI_0231 BCI_0232 panC leuS FALSE 0.011 199 -48.5
 2023199 2023200 BCI_0232 BCI_0233 leuS holA FALSE 0.412 217 348.781
 2023200 2023201 BCI_0233 BCI_0234 holA nadD TRUE 0.981 -7 83.503
 2023201 2023202 BCI_0234 BCI_0235 nadD mrdA FALSE 0.314 71 12.918
 2023202 2023203 BCI_0235 BCI_0236 mrdA mrdB TRUE 0.999 14 600.507
 2023203 2023204 BCI_0236 BCI_0237 mrdB lipB FALSE 0.105 128 -59.631
 2023204 2023205 BCI_0237 BCI_0238 lipB lipA TRUE 0.993 36 384.623
 2023205 2023206 BCI_0238 BCI_0239 lipA FALSE 0.015 257 -25.197
 2023206 2023207 BCI_0239 BCI_0240 pgsA FALSE 0.002 200 -29.265
 2023207 1394628 BCI_0240 BCI_0241 pgsA TRUE 0.626 42 0
 1394628 1394629 BCI_0241 BCI_0242 FALSE 0.038 144 0
 1394629 1394630 BCI_0242 BCI_0243 TRUE 0.824 14 0
 1394630 2023208 BCI_0243 BCI_0244 pgl FALSE 0.033 216 0
 2023210 2023211 BCI_0246 BCI_0247 bioB bioF TRUE 0.999 -3 415.689
 2023211 2023212 BCI_0247 BCI_0248 bioF bioC TRUE 0.994 -13 247.51
 2023212 2023213 BCI_0248 BCI_0249 bioC bioD TRUE 0.992 -7 174.08
 2023213 2023214 BCI_0249 BCI_0250 bioD FALSE 0.003 464 -28.39
 2023214 2023215 BCI_0250 BCI_0251 gpmA FALSE 0.034 60 -26.337
 2023215 2023216 BCI_0251 BCI_0252 gpmA serC TRUE 0.712 7 -39.895
 2023216 2023217 BCI_0252 BCI_0253 serC aroA TRUE 0.566 95 37.604
 2023217 2023218 BCI_0253 BCI_0254 aroA cmk TRUE 0.973 62 400.95
 2023218 2023219 BCI_0254 BCI_0255 cmk rpsA TRUE 0.91 133 636.079