VIMSS Operon Predictions for Yersinia pestis Nepal516

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2027831 2027832 YPN_0001 YPN_0002 TRUE 0.673 93 -0.399
 2027834 2027835 YPN_0004 YPN_0005 TRUE 0.978 4 25.908
 2027836 2027837 YPN_0006 YPN_0007 FALSE 0.096 205 -3.147
 2027837 2027838 YPN_0007 YPN_0008 TRUE 0.988 51 156.878
 2027838 2027839 YPN_0008 YPN_0009 TRUE 0.613 53 0.074
 2027840 2027841 YPN_0010 YPN_0011 TRUE 0.735 80 5.089
 1655001 1655002 YPN_r001 YPN_r002 FALSE 0.346 137 0
 1655002 1655003 YPN_r002 YPN_r003 FALSE 0.091 253 0
 1655003 1655004 YPN_r003 YPN_r004 TRUE 0.913 0 0
 1655004 1655005 YPN_r004 YPN_r005 TRUE 0.807 9 0
 1655005 2027842 YPN_r005 YPN_0012 FALSE 0.002 896 0
 2027844 2027845 YPN_0014 YPN_0015 TRUE 0.997 47 125.698
 2027845 2027846 YPN_0015 YPN_0016 FALSE 0.246 256 -4.28
 2027849 2027850 YPN_0019 YPN_0020 TRUE 0.792 70 11.477
 2027850 2027851 YPN_0020 YPN_0021 TRUE 0.739 -70 0.022
 2027851 2027852 YPN_0021 YPN_0022 FALSE 0.002 481 0.022
 2027853 2027854 YPN_0023 YPN_0024 FALSE 0.115 135 -47.265
 2027855 2027856 YPN_0025 YPN_0026 TRUE 0.99 14 34.853
 2027856 2027857 YPN_0026 YPN_0027 TRUE 0.942 187 45.026
 2027858 2027859 YPN_0028 YPN_0029 TRUE 0.921 4 0.073
 2027859 2027860 YPN_0029 YPN_0030 TRUE 0.924 71 6.446
 2027860 2027861 YPN_0030 YPN_0031 FALSE 0.397 241 19.816
 2027861 2027862 YPN_0031 YPN_0032 FALSE 0.005 339 0.011
 2027864 2027865 YPN_0034 YPN_0035 TRUE 0.897 68 83.122
 2027865 2027866 YPN_0035 YPN_0036 TRUE 0.975 7 30.804
 2027866 2027867 YPN_0036 YPN_0037 TRUE 0.949 0 0.068
 2027868 2027869 YPN_0038 YPN_0039 TRUE 0.906 54 0
 2027869 2027870 YPN_0039 YPN_0040 FALSE 0.001 613 -6.698
 2027870 2027871 YPN_0040 YPN_0041 FALSE 0.001 374 11.51
 2027872 2027873 YPN_0042 YPN_0043 TRUE 0.986 166 117.871
 2027873 2027874 YPN_0043 YPN_0044 TRUE 0.925 167 -34.891
 2027874 2027875 YPN_0044 YPN_0045 FALSE 0 599 -8.56
 2027875 2027876 YPN_0045 YPN_0046 FALSE 0.433 222 9.229
 2027876 2027877 YPN_0046 YPN_0047 FALSE 0.203 157 -5.382
 2027877 2027878 YPN_0047 YPN_0048 TRUE 0.986 76 166.002
 2027878 2027879 YPN_0048 YPN_0049 TRUE 0.676 65 -10.285
 2027880 2027881 YPN_0050 YPN_0051 TRUE 0.867 95 32.873
 2027884 2027885 YPN_0054 YPN_0055 TRUE 0.94 13 22.257
 1655051 2027887 YPN_r006 YPN_0057 FALSE 0.447 70 0
 2027887 2027888 YPN_0057 YPN_0058 FALSE 0.167 -67 5.206
 2027888 1655054 YPN_0058 YPN_r007 FALSE 0.007 484 0
 1655054 1655055 YPN_r007 YPN_r008 FALSE 0.346 137 0
 1655055 1655056 YPN_r008 YPN_r009 FALSE 0.091 253 0
 1655056 1655057 YPN_r009 YPN_r010 TRUE 0.913 0 0
 1655057 1655058 YPN_r010 YPN_r011 FALSE 0.378 120 0
 1655058 1655059 YPN_r011 YPN_r012 TRUE 0.807 9 0
 1655059 2027889 YPN_r012 YPN_0059 FALSE 0.002 978 0
 2027889 2027890 YPN_0059 YPN_0060 TRUE 0.972 86 72.199
 2027890 2027891 YPN_0060 YPN_0061 TRUE 0.993 12 81.452
 2027891 2027892 YPN_0061 YPN_0062 TRUE 0.999 0 79.807
 2027896 2027897 YPN_0066 YPN_0067 TRUE 0.991 -3 68.927
 2027897 2027898 YPN_0067 YPN_0068 TRUE 0.903 23 21.418
 2027898 2027899 YPN_0068 YPN_0069 FALSE 0.255 311 18.165
 2027899 2027900 YPN_0069 YPN_0070 TRUE 0.996 6 33.168
 2027901 2027902 YPN_0071 YPN_0072 TRUE 0.545 80 0.009
 2027902 2027903 YPN_0072 YPN_0073 TRUE 0.545 80 0.009
 2027903 2027904 YPN_0073 YPN_0074 TRUE 0.847 -16 0.01
 2027907 2027908 YPN_0077 YPN_0078 FALSE 0.356 181 0.029
 2027908 2027909 YPN_0078 YPN_0079 FALSE 0.337 196 0.07
 2027909 2027910 YPN_0079 YPN_0080 TRUE 0.939 0 0.006
 2027910 2027911 YPN_0080 YPN_0081 FALSE 0.002 506 -0.389
 2027912 2027913 YPN_0082 YPN_0083 TRUE 0.658 24 0.009
 2027913 2027914 YPN_0083 YPN_0084 TRUE 0.906 -34 10.682
 2027914 2027915 YPN_0084 YPN_0085 TRUE 0.962 5 11.061
 2027915 2027916 YPN_0085 YPN_0086 TRUE 0.954 28 16.333
 2027916 2027917 YPN_0086 YPN_0087 TRUE 0.946 64 15.416
 2027917 2027918 YPN_0087 YPN_0088 FALSE 0.002 810 0
 2027918 2027919 YPN_0088 YPN_0089 FALSE 0.337 97 0
 2027919 2027920 YPN_0089 YPN_0090 FALSE 0.063 239 -0.45
 2027922 2027923 YPN_0092 YPN_0093 TRUE 0.93 -69 0.002
 2027923 2027924 YPN_0093 YPN_0094 TRUE 0.901 4 0.002
 2027925 2027926 YPN_0095 YPN_0096 FALSE 0 480 183.593
 2027926 2027927 YPN_0096 YPN_0097 FALSE 0 550 -24.331
 2027927 2027928 YPN_0097 YPN_0098 TRUE 0.968 18 13.769
 2027928 2027929 YPN_0098 YPN_0099 TRUE 0.628 227 13.541
 2027929 2027930 YPN_0099 YPN_0100 TRUE 0.998 -3 96.098
 2027930 2027931 YPN_0100 YPN_0101 TRUE 0.979 -9 -12.031
 2027931 2027932 YPN_0101 YPN_0102 TRUE 0.966 244 584.282
 2027932 2027933 YPN_0102 YPN_0103 TRUE 0.88 -49 6.246
 2027933 2027934 YPN_0103 YPN_0104 TRUE 0.983 2 19.788
 2027934 2027935 YPN_0104 YPN_0105 TRUE 0.98 2 13.904
 2027935 2027936 YPN_0105 YPN_0106 TRUE 0.861 23 10.516
 2027936 2027937 YPN_0106 YPN_0107 TRUE 0.981 -3 15.266
 2027937 2027938 YPN_0107 YPN_0108 TRUE 0.958 9 15.266
 2027938 2027939 YPN_0108 YPN_0109 FALSE 0 524 8.728
 2027939 1655111 YPN_0109 YPN_r013 FALSE 0.326 149 0
 1655111 1655112 YPN_r013 YPN_r014 FALSE 0.438 84 0
 1655112 1655113 YPN_r014 YPN_r015 TRUE 0.621 17 0
 1655113 1655114 YPN_r015 YPN_r016 FALSE 0.442 76 0
 1655114 2027940 YPN_r016 YPN_0110 FALSE 0.002 867 0
 2027941 2027942 YPN_0111 YPN_0112 TRUE 0.998 3 115.076
 2027942 2027943 YPN_0112 YPN_0113 TRUE 0.988 31 121.049
 2027943 2027944 YPN_0113 YPN_0114 TRUE 0.999 -3 220.44
 2027944 2027945 YPN_0114 YPN_0115 FALSE 0.211 221 0.006
 2027948 2027949 YPN_0118 YPN_0119 TRUE 0.533 184 9.476
 2027949 2027950 YPN_0119 YPN_0120 TRUE 0.949 65 156.12
 2027950 2027951 YPN_0120 YPN_0121 TRUE 0.995 -3 163.79
 2027951 2027952 YPN_0121 YPN_0122 TRUE 0.994 0 68.808
 2027952 2027953 YPN_0122 YPN_0123 FALSE 0.335 102 -8.181
 2027955 2027956 YPN_0125 YPN_0126 TRUE 0.961 14 84.473
 2027956 2027957 YPN_0126 YPN_0127 FALSE 0 649 -15.05
 2027958 2027959 YPN_0128 YPN_0129 TRUE 0.833 87 19.045
 2027960 2027961 YPN_0130 YPN_0131 TRUE 0.681 78 4.299
 2027961 2027962 YPN_0131 YPN_0132 FALSE 0.194 107 -13.078
 2027964 2027965 YPN_0134 YPN_0135 TRUE 0.919 -133 28.311
 2027965 2027966 YPN_0135 YPN_0136 FALSE 0.025 277 0.013
 2027968 2027969 YPN_0138 YPN_0139 TRUE 0.993 -10 87.364
 2027969 2027970 YPN_0139 YPN_0140 TRUE 0.997 -3 75.119
 2027971 2027972 YPN_0141 YPN_0142 TRUE 0.717 130 10.51
 2027974 2027975 YPN_0144 YPN_0145 FALSE 0.008 414 0.155
 2027976 2027977 YPN_0146 YPN_0147 FALSE 0.356 212 0.755
 2027978 2027979 YPN_0148 YPN_0149 TRUE 0.974 -10 34.151
 2027980 2027981 YPN_0150 YPN_0151 TRUE 0.98 6 45.998
 2027981 2027982 YPN_0151 YPN_0152 TRUE 0.999 -10 525.487
 2027982 2027983 YPN_0152 YPN_0153 FALSE 0.127 311 62.962
 2027983 2027984 YPN_0153 YPN_0154 FALSE 0.128 214 0
 2027986 2027987 YPN_0156 YPN_0157 TRUE 0.962 181 275.391
 2027987 2027988 YPN_0157 YPN_0158 TRUE 1 -3 394.433
 2027988 2027989 YPN_0158 YPN_0159 TRUE 0.999 -3 344.454
 2027989 2027990 YPN_0159 YPN_0160 TRUE 0.998 15 491.881
 2027990 2027991 YPN_0160 YPN_0161 FALSE 0.239 228 0.078
 2027992 2027993 YPN_0162 YPN_0163 FALSE 0.334 92 -1.947
 2027993 2027994 YPN_0163 YPN_0164 TRUE 0.689 62 1.586
 2027994 2027995 YPN_0164 YPN_0165 TRUE 0.891 -28 -0.072
 2027995 2027996 YPN_0165 YPN_0166 TRUE 0.802 18 3.302
 2027996 2027997 YPN_0166 YPN_0167 FALSE 0.023 267 -1.918
 2027998 2027999 YPN_0168 YPN_0169 TRUE 0.899 298 278.617
 2027999 2028000 YPN_0169 YPN_0170 TRUE 1 -3 297.738
 2028000 2028001 YPN_0170 YPN_0171 TRUE 0.997 7 143.223
 2028001 2028002 YPN_0171 YPN_0172 TRUE 0.656 -3 68.689
 2028002 2028003 YPN_0172 YPN_0173 FALSE 0.23 101 -30.521
 2028003 2028004 YPN_0173 YPN_0174 FALSE 0.049 320 -29.542
 2028008 2028009 YPN_0178 YPN_0179 FALSE 0.17 121 -0.41
 2028009 2028010 YPN_0179 YPN_0180 FALSE 0.071 364 -1.545
 2028010 2028011 YPN_0180 YPN_0181 FALSE 0.026 272 -1.411
 2028011 2028012 YPN_0181 YPN_0182 FALSE 0.145 208 -0.58
 2028012 2028013 YPN_0182 YPN_0183 TRUE 0.841 92 -2.738
 2028013 2028014 YPN_0183 YPN_0184 TRUE 0.984 14 103.26
 2028014 2028015 YPN_0184 YPN_0185 TRUE 0.997 0 141.732
 2028015 2028016 YPN_0185 YPN_0186 TRUE 0.801 180 49.116
 2028016 2028017 YPN_0186 YPN_0187 TRUE 0.994 4 30.085
 2028017 2028018 YPN_0187 YPN_0188 TRUE 0.997 3 61.2
 2028018 2028019 YPN_0188 YPN_0189 TRUE 0.523 56 0.068
 2028019 2028020 YPN_0189 YPN_0190 TRUE 0.877 27 0
 2028020 2028021 YPN_0190 YPN_0191 TRUE 0.986 0 0
 2028021 2028022 YPN_0191 YPN_0192 TRUE 0.511 39 0
 2028022 2028023 YPN_0192 YPN_0193 TRUE 0.789 15 0.068
 2028025 2028026 YPN_0195 YPN_0196 TRUE 0.956 55 34.534
 2028027 2028028 YPN_0197 YPN_0198 TRUE 0.995 12 84.182
 2028029 2028030 YPN_0199 YPN_0200 TRUE 0.945 0 0.046
 2028030 2028031 YPN_0200 YPN_0201 FALSE 0.403 105 0
 2028031 2028032 YPN_0201 YPN_0202 FALSE 0.466 73 0
 2028032 2028033 YPN_0202 YPN_0203 TRUE 0.634 40 0.004
 2028033 2028034 YPN_0203 YPN_0204 TRUE 0.91 22 40.51
 2028034 1655210 YPN_0204 YPN_r017 FALSE 0.006 503 0
 1655210 1655211 YPN_r017 YPN_r018 FALSE 0.407 103 0
 1655211 1655212 YPN_r018 YPN_r019 FALSE 0.469 52 0
 1655212 1655213 YPN_r019 YPN_r020 FALSE 0.161 219 0
 1655213 1655214 YPN_r020 YPN_r021 TRUE 0.913 0 0
 1655214 2028035 YPN_r021 YPN_0205 FALSE 0.009 456 0
 2028035 2028036 YPN_0205 YPN_0206 TRUE 0.988 -3 12.074
 2028037 2028038 YPN_0207 YPN_0208 FALSE 0.107 211 -3.959
 2028039 2028040 YPN_0209 YPN_0210 TRUE 0.986 0 0
 2028040 1655221 YPN_0210 YPN_r022 FALSE 0.008 464 0
 1655221 1655222 YPN_r022 YPN_r023 TRUE 0.597 19 0
 1655222 1655223 YPN_r023 YPN_r024 FALSE 0.324 150 0
 1655223 1655224 YPN_r024 YPN_r025 TRUE 0.829 7 0
 1655224 2028041 YPN_r025 YPN_0211 FALSE 0.397 109 0
 2028041 2028042 YPN_0211 YPN_0212 TRUE 0.98 2 0
 2028042 2028043 YPN_0212 YPN_0213 FALSE 0.102 251 0
 2028043 2028044 YPN_0213 YPN_0214 TRUE 0.993 2 126.519
 2028044 2028045 YPN_0214 YPN_0215 TRUE 0.954 191 1035.397
 2028045 2028046 YPN_0215 YPN_0216 TRUE 1 4 1415.901
 2028046 2028047 YPN_0216 YPN_0217 TRUE 0.861 365 938.662
 2028047 2028048 YPN_0217 YPN_0218 TRUE 0.998 67 1321.509
 2028048 2028049 YPN_0218 YPN_0219 TRUE 0.574 343 652.76
 2028049 2028050 YPN_0219 YPN_0220 TRUE 0.993 93 661.743
 2028051 2028052 YPN_0221 YPN_0222 FALSE 0.008 432 0
 2028052 2028053 YPN_0222 YPN_0223 TRUE 0.994 -7 197.147
 2028053 2028054 YPN_0223 YPN_0224 TRUE 0.997 2 213.89
 2028054 2028055 YPN_0224 YPN_0225 TRUE 0.996 -3 23.393
 2028055 2028056 YPN_0225 YPN_0226 TRUE 0.99 -10 2.158
 2028056 2028057 YPN_0226 YPN_0227 TRUE 0.998 -13 33.912
 2028057 2028058 YPN_0227 YPN_0228 FALSE 0.001 376 -3.231
 2028059 2028060 YPN_0229 YPN_0230 FALSE 0.466 135 0.034
 2028060 2028061 YPN_0230 YPN_0231 TRUE 0.547 11