VIMSS Operon Predictions for Aeromonas hydrophila hydro. ATCC 7966

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2031812 2031813 AHA_0001 AHA_0002 dnaA-1 dnaN TRUE 0.994 84 922.077
 2031813 2031814 AHA_0002 AHA_0003 dnaN recF TRUE 0.999 3 774.687
 2031814 2031815 AHA_0003 AHA_0004 recF gyrB TRUE 1 -3 271.057
 2031816 2031817 AHA_0005 AHA_0006 TRUE 0.798 67 31.11
 2031818 2031819 AHA_0007 AHA_0008 TRUE 0.645 93 0
 2031824 2031825 AHA_0013 AHA_0014 TRUE 0.992 31 375.502
 2031825 2031826 AHA_0014 AHA_0015 kdpC TRUE 0.952 104 294.775
 2031826 2031827 AHA_0015 AHA_0016 kdpC kdpB TRUE 0.999 61 495.045
 2031827 2031828 AHA_0016 AHA_0017 kdpB kdpA TRUE 0.999 56 577.295
 2031828 2031829 AHA_0017 AHA_0018 kdpA TRUE 0.773 11 0
 2031829 2031830 AHA_0018 AHA_0019 gor FALSE 0.032 239 0
 2031830 2031831 AHA_0019 AHA_0020 gor FALSE 0.231 77 0
 2031831 2031832 AHA_0020 AHA_0021 FALSE 0.229 93 0
 2031832 2031833 AHA_0021 AHA_0022 TRUE 0.99 16 210.305
 2031833 2031834 AHA_0022 AHA_0023 TRUE 0.789 33 34.565
 1379772 1379773 AHA_0024 AHA_0025 FALSE 0.321 51 0
 1379773 1379774 AHA_0025 AHA_0026 TRUE 0.556 21 0
 1379774 1379775 AHA_0026 AHA_0027 FALSE 0.32 74 0
 1379775 2031835 AHA_0027 AHA_0028 FALSE 0.023 294 0
 2031836 2031837 AHA_0029 AHA_0030 pyk-1 TRUE 0.67 68 0
 2031838 2031839 AHA_0031 AHA_0032 TRUE 0.923 -3 16.284
 2031839 2031840 AHA_0032 AHA_0033 TRUE 0.947 -16 16.284
 2031840 2031841 AHA_0033 AHA_0034 FALSE 0.321 52 0
 2031842 2031843 AHA_0035 AHA_0036 TRUE 0.734 94 66.879
 2031843 2031844 AHA_0036 AHA_0037 TRUE 0.644 -3 -1.689
 2031844 2031845 AHA_0037 AHA_0038 TRUE 0.729 0 -0.524
 2031845 2031846 AHA_0038 AHA_0039 FALSE 0.191 195 56.457
 2031846 2031847 AHA_0039 AHA_0040 rpoZ TRUE 0.929 138 156.573
 2031847 2031848 AHA_0040 AHA_0041 rpoZ FALSE 0.469 80 6.568
 2031848 2031849 AHA_0041 AHA_0042 FALSE 0.101 44 -0.535
 2031850 2031851 AHA_0043 AHA_0044 kdkA TRUE 0.637 128 0
 2031854 2031855 AHA_0047 AHA_0048 TRUE 0.683 -15 0
 2031857 2031858 AHA_0049 AHA_0051 trpS-1 FALSE 0.009 192 -5.444
 2031861 2031862 AHA_0054 AHA_0055 FALSE 0.042 158 -11.41
 2031865 2031866 AHA_0058 AHA_0059 TRUE 0.828 -57 16.905
 2031866 2031867 AHA_0059 AHA_0060 TRUE 0.946 3 15.901
 2031867 2031868 AHA_0060 AHA_0061 TRUE 0.588 52 15.901
 2031868 2031869 AHA_0061 AHA_0062 matB TRUE 0.602 60 17.825
 2031870 2031871 AHA_0063 AHA_0064 evgA TRUE 0.996 3 25.901
 2031873 2031874 AHA_0066 AHA_0067 TRUE 0.899 130 53.923
 2031874 2031875 AHA_0067 AHA_0068 FALSE 0.375 122 11.63
 2031876 2031877 AHA_0069 AHA_0070 purK purE-1 TRUE 1 -3 1005.383
 2031877 2031878 AHA_0070 AHA_0071 purE-1 TRUE 0.559 63 -0.435
 2031878 2031879 AHA_0071 AHA_0072 TRUE 0.983 5 37.381
 2031880 2031881 AHA_0073 AHA_0074 FALSE 0.005 265 -6.437
 2031881 2031882 AHA_0074 AHA_0075 murI FALSE 0.42 118 40.904
 1379825 1379826 AHA_0077 AHA_0078 rrsA FALSE 0.037 228 0
 1379826 1379827 AHA_0078 AHA_0079 rrlA FALSE 0.035 232 0
 1379827 1379828 AHA_0079 AHA_0080 rrlA rrfA FALSE 0.165 118 0
 1379828 1379829 AHA_0080 AHA_0081 rrfA FALSE 0.212 106 0
 1379829 2031884 AHA_0081 AHA_0082 codA FALSE 0.017 398 0
 2031884 2031885 AHA_0082 AHA_0083 codA crcB FALSE 0.125 49 -18.327
 2031885 2031886 AHA_0083 AHA_0084 crcB FALSE 0.149 66 -54.304
 2031886 2031887 AHA_0084 AHA_0085 TRUE 0.995 9 142.933
 2031887 2031888 AHA_0085 AHA_0086 ubiB TRUE 0.996 0 228.662
 2031888 2031889 AHA_0086 AHA_0087 ubiB tatA TRUE 0.849 41 107.435
 2031889 2031890 AHA_0087 AHA_0088 tatA tatB TRUE 1 4 175.517
 2031890 2031891 AHA_0088 AHA_0089 tatB tatC TRUE 0.999 -3 311.391
 2031891 2031892 AHA_0089 AHA_0090 tatC FALSE 0.41 112 57.266
 2031892 2031893 AHA_0090 AHA_0091 hemB TRUE 0.624 4 -15.474
 2031893 2031894 AHA_0091 AHA_0092 hemB prlC FALSE 0.011 223 -58.497
 2031894 2031895 AHA_0092 AHA_0093 prlC FALSE 0.011 205 -0.591
 2031895 2031896 AHA_0093 AHA_0094 FALSE 0.269 95 0
 2031897 2031898 AHA_0095 AHA_0096 FALSE 0.024 197 -2.177
 2031898 2031899 AHA_0096 AHA_0097 TRUE 0.927 15 65.515
 2031900 2031901 AHA_0098 AHA_0099 trx rho FALSE 0.42 208 237.771
 2031901 2031902 AHA_0099 AHA_0100 rho FALSE 0.043 314 2.782
 2031902 2031903 AHA_0100 AHA_0101 FALSE 0.409 31 0
 2031903 2031904 AHA_0101 AHA_0102 TRUE 0.657 169 78.151
 2031907 2031908 AHA_0105 AHA_0106 TRUE 0.978 -3 81.773
 2031910 2031911 AHA_0107 AHA_0109 FALSE 0.474 4 -8.217
 2031911 2031912 AHA_0109 AHA_0110 TRUE 1 11 585.854
 2031912 2031913 AHA_0110 AHA_0111 TRUE 0.999 -3 367.377
 2031913 2031914 AHA_0111 AHA_0112 TRUE 0.999 -3 402.777
 2031914 2031915 AHA_0112 AHA_0113 TRUE 0.978 65 289.318
 2031917 2031918 AHA_0115 AHA_0116 TRUE 0.988 3 38.136
 2031921 2031922 AHA_0119 AHA_0120 norV norW TRUE 0.974 -3 42.816
 2031922 2031923 AHA_0120 AHA_0121 norW FALSE 0.179 52 -3.376
 2031923 2031924 AHA_0121 AHA_0122 FALSE 0.045 122 -4.292
 2031924 2031925 AHA_0122 AHA_0123 FALSE 0.004 288 -7.982
 2031926 2031927 AHA_0124 AHA_0125 FALSE 0.179 114 0
 2031929 2031930 AHA_0127 AHA_0128 glyS glyQ TRUE 1 10 793.671
 2031934 2031935 AHA_0132 AHA_0133 FALSE 0.279 22 -31.788
 2031937 2031938 AHA_0135 AHA_0136 TRUE 0.933 5 27.293
 2031938 2031939 AHA_0136 AHA_0137 TRUE 0.879 82 41.083
 2031939 2031940 AHA_0137 AHA_0138 fadA FALSE 0.004 313 -5.875
 2031940 2031941 AHA_0138 AHA_0139 fadA fadB TRUE 0.987 22 130.467
 2031941 2031942 AHA_0139 AHA_0140 fadB FALSE 0.14 203 -6.763
 2031943 2031944 AHA_0141 AHA_0142 pepQ TRUE 0.975 0 53.151
 2031944 2031945 AHA_0142 AHA_0143 trkH TRUE 0.853 37 80.482
 2031945 2031946 AHA_0143 AHA_0144 trkH TRUE 0.923 -61 85.324
 2031946 1379893 AHA_0144 AHA_0145 rrsB FALSE 0.015 452 0
 1379893 1379894 AHA_0145 AHA_0146 rrsB FALSE 0.047 202 0
 1379894 1379895 AHA_0146 AHA_0147 rrlB FALSE 0.036 229 0
 1379895 1379896 AHA_0147 AHA_0148 rrlB rrfB FALSE 0.172 116 0
 2031947 2031948 AHA_0149 AHA_0150 FALSE 0.32 73 0
 2031954 2031955 AHA_0156 AHA_0157 FALSE 0.021 187 -29.038
 2031955 2031956 AHA_0157 AHA_0158 TRUE 0.838 70 65.129
 2031956 2031957 AHA_0158 AHA_0159 coaBC TRUE 0.976 41 337.619
 2031958 2031959 AHA_0160 AHA_0161 radC rpmB TRUE 0.612 137 133.277
 2031959 2031960 AHA_0161 AHA_0162 rpmB rpmG TRUE 0.999 12 357.965
 2031960 2031961 AHA_0162 AHA_0163 rpmG FALSE 0.454 94 3.125
 2031961 2031962 AHA_0163 AHA_0164 mutM TRUE 0.644 30 7.567
 2031962 2031963 AHA_0164 AHA_0165 mutM FALSE 0.034 179 -16.979
 2031967 2031968 AHA_0169 AHA_0170 rfaF waaA TRUE 0.978 2 -39.267
 2031969 2031970 AHA_0171 AHA_0172 TRUE 0.964 61 235.813
 2031970 2031971 AHA_0172 AHA_0173 TRUE 0.999 -3 114.12
 2031972 2031973 AHA_0174 AHA_0175 FALSE 0.113 30 -9.897
 2031973 2031974 AHA_0175 AHA_0176 FALSE 0.327 45 0
 2031974 2031975 AHA_0176 AHA_0177 FALSE 0.122 133 0
 2031976 2031977 AHA_0178 AHA_0179 fliL-1 FALSE 0.322 58 0
 2031978 2031979 AHA_0180 AHA_0181 ubiA TRUE 0.996 -3 116.013
 2031981 2031982 AHA_0183 AHA_0184 lexA FALSE 0.015 440 0
 2031984 2031985 AHA_0186 AHA_0187 FALSE 0.473 -10 -8.771
 2031986 2031987 AHA_0188 AHA_0189 cpxA FALSE 0.166 33 -7.172
 2031987 2031988 AHA_0189 AHA_0190 cpxA cpxR TRUE 0.994 -3 91.551
 2031989 2031990 AHA_0191 AHA_0192 fieF cysE TRUE 0.533 9 -24.548
 2031990 2031991 AHA_0192 AHA_0193 cysE FALSE 0.393 22 -0.271
 2031991 2031992 AHA_0193 AHA_0194 FALSE 0.326 46 0
 1379946 1379947 AHA_0198 AHA_0199 rrsC FALSE 0.32 74 0
 1379947 1379948 AHA_0199 AHA_0200 TRUE 0.773 11 0
 1379948 1379949 AHA_0200 AHA_0201 rrlC FALSE 0.034 233 0
 1379949 1379950 AHA_0201 AHA_0202 rrlC FALSE 0.019 339 0
 1379950 1379951 AHA_0202 AHA_0203 rrfC TRUE 0.532 22 0
 1379951 2031996 AHA_0203 AHA_0204 rrfC FALSE 0.083 154 0
 2031996 2031997 AHA_0204 AHA_0205 FALSE 0.047 322 28.344
 2031997 2031998 AHA_0205 AHA_0206 TRUE 0.851 -387 0
 2031998 2031999 AHA_0206 AHA_0207 FALSE 0.16 103 0
 2031999 2032000 AHA_0207 AHA_0208 FALSE 0.221 29 -12.635
 2032000 2032001 AHA_0208 AHA_0209 FALSE 0.027 167 -3.809
 2032001 2032002 AHA_0209 AHA_0210 FALSE 0.019 212 -0.51
 2032005 2032006 AHA_0213 AHA_0214 TRUE 0.963 50 267.792
 2032008 2032009 AHA_0216 AHA_0217 TRUE 0.999 3 537.257
 2032009 2032010 AHA_0217 AHA_0218 TRUE 0.983 83 537.803
 2032010 2032011 AHA_0218 AHA_0219 TRUE 0.977 84 355.631
 2032013 2032014 AHA_0221 AHA_0222 TRUE 0.808 -3 0
 2032014 2032015 AHA_0222 AHA_0223 TRUE 0.83 -3 0
 2032017 2032018 AHA_0225 AHA_0226 FALSE 0.014 492 0
 2032020 2032021 AHA_0228 AHA_0229 FALSE 0.224 81 -1.654
 2032021 2032022 AHA_0229 AHA_0230 FALSE 0.148 98 -0.761
 2032024 2032025 AHA_0232 AHA_0233 FALSE 0.471 25 0
 2032026 2032027 AHA_0234 AHA_0235 FALSE 0.319 76 0
 2032028 2032029 AHA_0236 AHA_0237 FALSE 0.028 201 -0.316
 2032031 2032032 AHA_0239 AHA_0240 TRUE 0.864 -16 24.035
 2032032 2032033 AHA_0240 AHA_0241 rarD-1 FALSE 0.14 68 -6.548
 2032033 2032034 AHA_0241 AHA_0242 rarD-1 FALSE 0.137 126 0
 2032034 2032035 AHA_0242 AHA_0243 TRUE 0.818 9 0
 2032035 2032036 AHA_0243 AHA_0244 FALSE 0.006 262 21.862
 2032037 2032038 AHA_0245 AHA_0246 mmsA-1 TRUE 0.644 99 39.378
 2032038 2032039 AHA_0246 AHA_0247 mmsA-1 FALSE 0.067 85 -7.066
 2032039 2032040 AHA_0247 AHA_0248 ald FALSE 0.495 -3 -3.397
 2032040 2032041 AHA_0248 AHA_0249 ald FALSE 0.064 120 -0.19
 2032041 2032042 AHA_0249 AHA_0250 FALSE 0.007 300 -1.238
 2032044 2032045 AHA_0252 AHA_0253 TRUE 0.909 -3 1.807
 2032046 2032047 AHA_0254 AHA_0255 trkA TRUE 0.971 97 38.794
 2032047 2032048 AHA_0255 AHA_0256 trkA sun TRUE 0.739 148 121.354
 2032048 2032049 AHA_0256 AHA_0257 sun fmt TRUE 0.994 57 640.695
 2032049 2032050 AHA_0257 AHA_0258 fmt def-1 TRUE 1 13 775.012
 2032051 2032052 AHA_0259 AHA_0260 dprA TRUE 0.995 2 157.175
 2032052 2032053 AHA_0260 AHA_0261 dprA TRUE 0.987 -7 133.76
 2032053 2032054 AHA_0261 AHA_0262 TRUE 0.787 56 72.571
 2032054 2032055 AHA_0262 AHA_0263 purE-2 FALSE 0.453 75 3.571
 2032055 2032056 AHA_0263 AHA_0264 purE-2 FALSE 0.423 135 9.207
 2032056 2032057 AHA_0264 AHA_0265 hemF TRUE 0.739 95 27.786
 2032057 2032058 AHA_0265 AHA_0266 hemF aroE TRUE 0.517 104 22.562
 2032058 2032059 AHA_0266 AHA_0267 aroE TRUE 0.968 -3 57.819
 2032061 2032062 AHA_0269 AHA_0270 FALSE 0.012 630 0
 2032062 2032063 AHA_0270 AHA_0271 TRUE 0.85 12 0.931
 2032063 2032064 AHA_0271 AHA_0272 hemN TRUE 0.777 28 40.856
 2032065 2032066 AHA_0273 AHA_0274 add-1 ntrC FALSE 0.025 142 -18.303
 2032066 2032067 AHA_0274 AHA_0275 ntrC glnL TRUE 0.999 10 375.022
 2032067 2032068 AHA_0275 AHA_0276 glnL TRUE 0.716 81 63.352
 2032068 2032069 AHA_0276 AHA_0277 glnA TRUE 0.661 93 34.18
 2032070 2032071 AHA_0278 AHA_0279 typA FALSE 0.034 174 -23.831
 2032071 2032072 AHA_0279 AHA_0281 dtd TRUE 0.779 81 71.493
 2032075 2032076 AHA_0283 AHA_0284 recG FALSE 0.049 143 -5.011
 2032076 2032077 AHA_0284 AHA_0285 recG pssA FALSE 0.018 177 -27.442
 2032077 2032078 AHA_0285 AHA_0286 pssA FALSE 0.035 129 -23.181
 2032079 2032080 AHA_0287 AHA_0288 aroK-1 edd TRUE 0.969 -3 -19.025
 2032080 2032081 AHA_0288 AHA_0289 edd eda TRUE 0.989 21 211.746
 2032084 2032085 AHA_0292 AHA_0293 yibP gpmI TRUE 0.992 10 125.023
 2032086 2032087 AHA_0294 AHA_0295 secB TRUE 0.858 48 182.027
 2032087 2032088 AHA_0295 AHA_0296 secB TRUE 0.992 3 206.192
 2032089 2032090 AHA_0297 AHA_0298 gntY TRUE 0.745 81 53.401
 2032091 2032092 AHA_0299 AHA_0300 bioH FALSE 0.463 72