VIMSS Operon Predictions for Alcanivorax borkumensis SK2

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2079671 2079672 ABO_0001 ABO_0002 dnaA dnaN TRUE 0.992 53 911.767
 2079672 2079673 ABO_0002 ABO_0003 dnaN recF TRUE 0.959 199 681.414
 2079673 2079674 ABO_0003 ABO_0004 recF gyrB TRUE 0.998 10 281.04
 2079675 2079676 ABO_0005 ABO_0006 hns plsC FALSE 0.136 153 -13.381
 2079676 2079677 ABO_0006 ABO_0007 plsC TRUE 0.948 -3 121.746
 2079677 2079678 ABO_0007 ABO_0008 glyS FALSE 0.489 119 100.127
 2079678 2079679 ABO_0008 ABO_0009 glyS glyQ TRUE 1 0 841.572
 2079682 2079683 ABO_0012 ABO_0013 FALSE 0.444 91 3.84
 2079683 2079684 ABO_0013 ABO_0014 FALSE 0.162 129 -0.453
 2079684 2079685 ABO_0014 ABO_0015 TRUE 0.686 11 -7.558
 2079685 2079686 ABO_0015 ABO_0016 TRUE 0.934 -10 106.826
 2079686 2079687 ABO_0016 ABO_0017 TRUE 0.96 14 96.454
 2079687 2079688 ABO_0017 ABO_0018 FALSE 0.187 153 0
 2079690 2079691 ABO_0020 ABO_0021 mmsA acdA TRUE 0.807 142 141.333
 2079691 2079692 ABO_0021 ABO_0022 acdA mmsB TRUE 0.753 120 47.514
 2079695 2079696 ABO_0025 ABO_0026 FALSE 0.353 68 -2.127
 2079696 2079697 ABO_0026 ABO_0027 acpD FALSE 0.397 39 -19.753
 2079698 2079699 ABO_0028 ABO_0029 FALSE 0.371 31 -6.313
 2079700 2079701 ABO_0030 ABO_0031 ygiX TRUE 0.975 -3 66.104
 2079702 2079703 ABO_0032 ABO_0033 dsbG FALSE 0.452 -3 -0.634
 2079704 2079705 ABO_0034 ABO_0035 pyrC-2 pyrB TRUE 0.991 -52 848.711
 2079705 2079706 ABO_0035 ABO_0036 pyrB pyrR TRUE 0.992 3 177.299
 2079707 2079708 ABO_0037 ABO_0038 TRUE 0.979 19 212.216
 2079710 2079711 ABO_0040 ABO_0041 FALSE 0.175 142 -0.476
 2079714 2079715 ABO_0044 ABO_0045 FALSE 0.054 263 -1.068
 2079715 2079716 ABO_0045 ABO_0046 FALSE 0.008 670 0
 2079716 2079717 ABO_0046 ABO_0047 FALSE 0.177 119 0
 2079717 2079718 ABO_0047 ABO_0048 FALSE 0.378 53 0
 2079719 2079720 ABO_0049 ABO_0050 TRUE 0.675 14 0
 2079720 2079721 ABO_0050 ABO_0051 guaA FALSE 0.043 301 0
 2079723 2079724 ABO_0053 ABO_0054 FALSE 0.052 251 -0.349
 2079724 2079725 ABO_0054 ABO_0055 TRUE 0.537 130 37.72
 2079725 2079726 ABO_0055 ABO_0056 FALSE 0.056 272 0
 2079726 2079727 ABO_0056 ABO_0057 TRUE 0.689 4 0
 2079727 2079728 ABO_0057 ABO_0058 FALSE 0.178 164 0
 2079728 2079729 ABO_0058 ABO_0059 FALSE 0.117 128 -2.565
 2079729 2079730 ABO_0059 ABO_0060 FALSE 0.009 453 -0.034
 2079730 2079731 ABO_0060 ABO_0061 FALSE 0.02 392 0
 2079732 2079733 ABO_0062 ABO_0063 TRUE 0.522 38 0
 2079735 2079736 ABO_0065 ABO_0066 FALSE 0.016 330 -2.82
 2079736 2079737 ABO_0066 ABO_0067 TRUE 0.773 -7 0.244
 2079738 2079739 ABO_0068 ABO_0069 serA FALSE 0.089 127 -6.016
 2079739 2079740 ABO_0069 ABO_0070 TRUE 0.907 -3 37.445
 2079740 2079741 ABO_0070 ABO_0071 TRUE 0.832 44 38.585
 2079741 2079742 ABO_0071 ABO_0072 FALSE 0.427 200 3.87
 2079743 2079744 ABO_0073 ABO_0074 FALSE 0.249 80 0
 2079745 2079746 ABO_0075 ABO_0076 kefB fhuE FALSE 0.473 79 -19.484
 2079746 2079747 ABO_0076 ABO_0077 fhuE TRUE 0.53 37 0
 2079748 2079749 ABO_0078 ABO_0079 FALSE 0.006 553 -0.576
 2079749 2079750 ABO_0079 ABO_0080 ggt FALSE 0.487 50 -15.172
 2079750 2079751 ABO_0080 ABO_0081 ggt coaD FALSE 0.117 234 -15.415
 2079752 2079753 ABO_0082 ABO_0083 FALSE 0.03 415 0
 2079754 2079755 ABO_0084 ABO_0085 FALSE 0.124 129 -4.83
 2079755 2079756 ABO_0085 ABO_0086 TRUE 0.763 60 42.143
 2079756 2079757 ABO_0086 ABO_0087 aldH FALSE 0.495 150 14.808
 2079760 2079761 ABO_0090 ABO_0091 FALSE 0.279 -10 -3.057
 2079761 2079762 ABO_0091 ABO_0092 FALSE 0.106 92 -1.865
 2079762 2079763 ABO_0092 ABO_0093 FALSE 0.467 16 -6.056
 2079764 2079765 ABO_0094 ABO_0095 gloA FALSE 0.091 109 -4.844
 2079765 2079766 ABO_0095 ABO_0096 gloA FALSE 0.045 227 -5.877
 2079766 2079767 ABO_0096 ABO_0097 TRUE 0.977 76 374.726
 2079767 2079768 ABO_0097 ABO_0098 FALSE 0.193 217 -0.608
 2079768 2079769 ABO_0098 ABO_0099 cybB FALSE 0.056 236 -1.267
 2079769 2079770 ABO_0099 ABO_0100 cybB lpxL3 FALSE 0.363 64 -0.07
 2079770 2079771 ABO_0100 ABO_0101 lpxL3 FALSE 0.367 -7 -0.25
 2079771 2079772 ABO_0101 ABO_0102 cheW FALSE 0.425 -3 -4.656
 2079772 2079773 ABO_0102 ABO_0103 cheW cheB TRUE 0.862 73 11.911
 2079773 2079774 ABO_0103 ABO_0104 cheB chpA TRUE 0.962 -3 4.035
 2079774 2079775 ABO_0104 ABO_0105 chpA cheR TRUE 0.765 142 4.855
 2079775 2079776 ABO_0105 ABO_0106 cheR TRUE 0.948 32 4.105
 2079776 2079777 ABO_0106 ABO_0107 pilI TRUE 0.957 59 57.378
 2079777 2079778 ABO_0107 ABO_0108 pilI pilH TRUE 0.968 12 36.996
 2079778 2079779 ABO_0108 ABO_0109 pilH pilG TRUE 0.979 33 28.376
 2079780 2079781 ABO_0110 ABO_0111 gshB tonB TRUE 0.582 119 29.759
 2079781 2079782 ABO_0111 ABO_0112 tonB algH TRUE 0.526 166 14.55
 2079782 2079783 ABO_0112 ABO_0113 algH TRUE 0.923 80 309.018
 2079786 2079787 ABO_0116 ABO_0117 adhC TRUE 0.939 79 279.773
 2079788 2079789 ABO_0118 ABO_0119 dhlA FALSE 0.007 628 -0.082
 2079789 2079790 ABO_0119 ABO_0120 dhlA amiC TRUE 0.545 38 -0.106
 2079793 2079794 ABO_0123 ABO_0124 fimC TRUE 0.674 -3 0
 2079794 2079795 ABO_0124 ABO_0125 fimC fimD TRUE 0.903 -24 48.446
 2079795 2079796 ABO_0125 ABO_0126 fimD fimA TRUE 0.637 56 43.72
 2079796 2079797 ABO_0126 ABO_0127 fimA trkH FALSE 0.01 409 -14.543
 2079797 2079798 ABO_0127 ABO_0128 trkH trkA TRUE 0.937 112 193.747
 2079798 2079799 ABO_0128 ABO_0129 trkA rsmB TRUE 0.976 -3 155.018
 2079799 2079800 ABO_0129 ABO_0130 rsmB fmt TRUE 0.99 -43 653.126
 2079800 2079801 ABO_0130 ABO_0131 fmt def-1 TRUE 0.978 191 854.567
 2079802 2079803 ABO_0132 ABO_0133 dprA TRUE 0.909 74 156.299
 2079803 2079804 ABO_0133 ABO_0134 dprA FALSE 0.478 87 2.701
 2079804 2079805 ABO_0134 ABO_0135 TRUE 0.923 30 44.411
 2079805 2079806 ABO_0135 ABO_0136 aroE TRUE 0.909 -3 36.834
 2079806 2079807 ABO_0136 ABO_0137 aroE FALSE 0.406 25 -3.329
 2079807 2079808 ABO_0137 ABO_0138 FALSE 0.295 64 -0.209
 2079810 2079811 ABO_0140 ABO_0141 prlC FALSE 0.268 75 0
 2079811 2079812 ABO_0141 ABO_0142 FALSE 0.056 272 0
 2079816 2079817 ABO_0146 ABO_0147 cobS FALSE 0.116 196 -31.339
 2079817 2079818 ABO_0147 ABO_0148 cobS ech1 FALSE 0.041 271 -9.57
 2079819 2079820 ABO_0149 ABO_0150 FALSE 0.388 -30 0
 2079820 2079821 ABO_0150 ABO_0151 FALSE 0.454 -13 0
 2079821 2079822 ABO_0151 ABO_0152 FALSE 0.483 42 0
 2079822 2079823 ABO_0152 ABO_0153 cspE FALSE 0.192 149 0
 2079823 2079824 ABO_0153 ABO_0154 cspE FALSE 0.012 556 0
 2079824 2079825 ABO_0154 ABO_0155 znuA FALSE 0.042 303 0
 2079826 2079827 ABO_0156 ABO_0157 znuC znuB TRUE 0.989 -73 630.129
 2079827 2079828 ABO_0157 ABO_0158 znuB FALSE 0.117 192 -20.957
 2079829 2079830 ABO_0159 ABO_0160 FALSE 0.192 149 0
 2079830 2079831 ABO_0160 ABO_0161 FALSE 0.195 145 0
 2079831 2079832 ABO_0161 ABO_0162 rubB FALSE 0.17 102 5.803
 2079832 2079833 ABO_0162 ABO_0163 rubB rubA TRUE 0.823 50 30.823
 2079834 2079835 ABO_0164 ABO_0165 pabA ubiA TRUE 0.85 83 80.385
 2079835 2079836 ABO_0165 ABO_0166 ubiA phoB FALSE 0.078 326 -6.066
 2079836 2079837 ABO_0166 ABO_0167 phoB phoR TRUE 0.959 90 308.537
 2079838 2079839 ABO_0168 ABO_0169 recG oxyR TRUE 0.527 121 58.281
 2079840 2079841 ABO_0170 ABO_0171 purE FALSE 0.016 377 -25.578
 2079841 2079842 ABO_0171 ABO_0172 purE purK TRUE 0.995 45 1045.223
 2079842 2079843 ABO_0172 ABO_0173 purK FALSE 0.281 77 -0.08
 2079844 2079845 ABO_0174 ABO_0175 FALSE 0.086 180 -12.461
 2079845 2079846 ABO_0175 ABO_0176 FALSE 0.479 320 96.133
 2079846 2079847 ABO_0176 ABO_0177 rpoZ TRUE 0.591 252 43.897
 2079847 2079848 ABO_0177 ABO_0178 rpoZ gmk-2 TRUE 0.751 151 74.291
 2079849 2079850 ABO_0179 ABO_0180 ilvD-1 TRUE 0.54 19 -1.761
 2079850 2079851 ABO_0180 ABO_0181 ilvD-1 FALSE 0.089 183 -0.337
 2079851 2079852 ABO_0181 ABO_0182 TRUE 0.574 30 0
 2079852 2079853 ABO_0182 ABO_0183 TRUE 0.65 19 0
 2079853 2079854 ABO_0183 ABO_0184 fadB TRUE 0.656 48 -0.282
 2079854 2079855 ABO_0184 ABO_0185 fadB fadE-1 TRUE 0.71 39 -6.359
 2079855 2079856 ABO_0185 ABO_0186 fadE-1 fadE-2 TRUE 0.989 9 186.562
 2079856 2079857 ABO_0186 ABO_0187 fadE-2 FALSE 0.391 -19 -0.147
 2079858 2079859 ABO_0188 ABO_0189 FALSE 0.494 41 0
 2079859 2079860 ABO_0189 ABO_0190 TRUE 0.807 -3 3.555
 2079860 2079861 ABO_0190 ABO_0191 TRUE 0.674 -3 0
 2079861 2079862 ABO_0191 ABO_0192 FALSE 0.006 1195 0
 2079862 2079863 ABO_0192 ABO_0193 TRUE 0.546 34 0
 2079863 2079864 ABO_0193 ABO_0194 FALSE 0.02 396 0
 2079864 2079865 ABO_0194 ABO_0195 estB TRUE 0.66 -3 -0.124
 2079865 2079866 ABO_0195 ABO_0196 estB TRUE 0.531 39 -0.231
 2079866 2079867 ABO_0196 ABO_0197 TRUE 0.631 -3 0
 2079870 2079871 ABO_0200 ABO_0201 fdx p450 TRUE 0.832 15 0
 2079871 2079872 ABO_0201 ABO_0202 p450 alkJ2 TRUE 0.703 21 0
 2079872 2079873 ABO_0202 ABO_0203 alkJ2 FALSE 0.144 144 -2.617
 2079873 2079874 ABO_0203 ABO_0204 FALSE 0.007 833 -2.341
 2079876 2079877 ABO_0206 ABO_0207 rph pyrE TRUE 0.784 79 106.367
 2079877 2079878 ABO_0207 ABO_0208 pyrE TRUE 0.893 3 14.305
 2079879 2079880 ABO_0209 ABO_0210 ttk argB FALSE 0.29 204 60.002
 2079880 2079881 ABO_0210 ABO_0211 argB pgm FALSE 0.397 179 8.899
 2079881 2079882 ABO_0211 ABO_0212 pgm dut FALSE 0.478 151 9.512
 2079882 2079883 ABO_0212 ABO_0213 dut coaBC TRUE 0.956 78 369.074
 2079884 2079885 ABO_0214 ABO_0215 radC rpmB TRUE 0.531 260 159.85
 2079885 2079886 ABO_0215 ABO_0216 rpmB rpmG TRUE 0.995 23 387.178
 2079886 2079887 ABO_0216 ABO_0217 rpmG FALSE 0.011 574 0
 2079887 2079888 ABO_0217 ABO_0218 FALSE 0.227 87 0
 2079888 2079889 ABO_0218 ABO_0219 TRUE 0.85 -10 65.754
 2079889 2079890 ABO_0219 ABO_0220 TRUE 0.949 13 70.293
 2079890 2079891 ABO_0220 ABO_0221 TRUE 0.885 84 92.587
 2079891 2079892 ABO_0221 ABO_0222 TRUE 0.893 120 106.628
 2079892 2079893 ABO_0222 ABO_0223 TRUE 0.965 -7 23.85
 2079893 2079894 ABO_0223 ABO_0224 TRUE 0.932 22 13.838
 2079894 2079895 ABO_0224 ABO_0225 TRUE 0.631 -3 0
 2079895 2079896 ABO_0225 ABO_0226 FALSE 0.212 93 0
 2079896 2079897 ABO_0226 ABO_0227 FALSE 0.309 66 0
 2079897 2079898 ABO_0227 ABO_0228 FALSE 0.006 1303 0
 2079898 2079899 ABO_0228 ABO_0229 FALSE 0.007 767 0
 2079899 2079900 ABO_0229 ABO_0230 FALSE 0.039 237 -1.023
 2079903 2079904 ABO_0233 ABO_0234 TRUE 0.746 -22 59.401
 2079904 2079905 ABO_0234 ABO_0235 TRUE 0.906 -3 62.283
 2079905 2079906 ABO_0235 ABO_0236 TRUE 0.878 -3 58.479
 2079909 2079910 ABO_0239 ABO_0240 TRUE 0.837 166 139.445
 2079910 2079911 ABO_0240 ABO_0241 TRUE 0.977 26 161.35
 2079911 2079912 ABO_0241 ABO_0242 TRUE 0.865 67 125.059
 2079913 2079914 ABO_0243 ABO_0244 FALSE 0.137 193 0
 2079915 2079916 ABO_0245 ABO_0246 FALSE 0.107 95 -1.391
 2079916 2079917 ABO_0246 ABO_0247 FALSE 0.195 59 -1.007
 2079917 2079918 ABO_0247 ABO_0248 FALSE 0.089 116 -1.675
 2079918 2079919 ABO_0248 ABO_0249 TRUE 0.989 0 260.622
 2079919 2079920 ABO_0249 ABO_0250 TRUE 0.932 -7 83.94
 2079920 2079921 ABO_0250 ABO_0251 FALSE 0.096 130 -6.059
 2079921 2079922 ABO_0251 ABO_0252 FALSE 0.235 52 -2.436
 2079922 2079923 ABO_0252 ABO_0253 fadA1 FALSE 0.121 208 -1.008
 2079925 2079926 ABO_0255 ABO_0256 bioA FALSE 0.098 143 -5.364
 2079926 2079927 ABO_0256 ABO_0257 bioA FALSE 0.009 622 0
 2079927 2079928 ABO_0257 ABO_0258 fklB-1 TRUE 0.626 23 0
 2079929 2079930 ABO_0259 ABO_0260 algQ FALSE 0.031 291 -20.266
 2079930 2079931 ABO_0260 ABO_0261 TRUE 0.976 -22 346.365
 2079931 2079932 ABO_0261 ABO_0262 dsbB TRUE 0.737 8 -18.408
 2079932 2079933 ABO_0262 ABO_0263 dsbB gshA FALSE 0.024