VIMSS Operon Predictions for Burkholderia ambifaria MC40-6

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 3073545 3073546 BamMC406DRAFT_4254 BamMC406DRAFT_4255 FALSE 0.36 39 0.965
 3073546 3073547 BamMC406DRAFT_4255 BamMC406DRAFT_4256 FALSE 0.023 204 0.225
 3073547 3073548 BamMC406DRAFT_4256 BamMC406DRAFT_4257 TRUE 0.958 -3 6.125
 3073551 3073552 BamMC406DRAFT_4259 BamMC406DRAFT_4260 FALSE 0 343 -14.835
 3073552 3073553 BamMC406DRAFT_4260 BamMC406DRAFT_4261 FALSE 0 332 0.597
 3073553 3073554 BamMC406DRAFT_4261 BamMC406DRAFT_4262 FALSE 0.08 157 0.67
 3073555 3073556 BamMC406DRAFT_4263 BamMC406DRAFT_4264 FALSE 0.426 91 3.963
 3073560 3073561 BamMC406DRAFT_4268 BamMC406DRAFT_4269 TRUE 0.975 3 13.606
 3073561 3073562 BamMC406DRAFT_4269 BamMC406DRAFT_4867 FALSE 0.011 140 0
 3073563 3073564 BamMC406DRAFT_4270 BamMC406DRAFT_4271 FALSE 0.151 65 -0.742
 3073564 3073565 BamMC406DRAFT_4271 BamMC406DRAFT_4272 FALSE 0.257 -3 -0.128
 3073565 3073566 BamMC406DRAFT_4272 BamMC406DRAFT_4273 FALSE 0.002 240 2.285
 3073567 3073568 BamMC406DRAFT_4274 BamMC406DRAFT_4275 FALSE 0.003 215 -8.911
 3073568 3073569 BamMC406DRAFT_4275 BamMC406DRAFT_4276 TRUE 0.916 -3 6.167
 3073569 3073570 BamMC406DRAFT_4276 BamMC406DRAFT_4277 FALSE 0 494 0.017
 3073570 3073571 BamMC406DRAFT_4277 BamMC406DRAFT_4278 FALSE 0.115 77 0.017
 3073573 3073574 BamMC406DRAFT_4279 BamMC406DRAFT_4280 FALSE 0.01 224 0
 3073575 3073576 BamMC406DRAFT_4281 BamMC406DRAFT_4282 FALSE 0.001 1022 0
 3073576 3073577 BamMC406DRAFT_4282 BamMC406DRAFT_4283 FALSE 0.071 152 0
 3073577 3073578 BamMC406DRAFT_4283 BamMC406DRAFT_4284 TRUE 0.909 -3 9.254
 3073578 3073579 BamMC406DRAFT_4284 BamMC406DRAFT_4285 FALSE 0.119 81 -0.293
 3073579 3073580 BamMC406DRAFT_4285 BamMC406DRAFT_4286 TRUE 0.863 33 3.114
 3073580 3073581 BamMC406DRAFT_4286 BamMC406DRAFT_4287 TRUE 0.714 67 1.284
 3073581 3073582 BamMC406DRAFT_4287 BamMC406DRAFT_4288 TRUE 0.983 15 12.096
 3073582 3073583 BamMC406DRAFT_4288 BamMC406DRAFT_4289 TRUE 0.841 45 -0.314
 3073583 3073584 BamMC406DRAFT_4289 BamMC406DRAFT_4290 TRUE 0.674 105 -3.34
 3073584 3073585 BamMC406DRAFT_4290 BamMC406DRAFT_4869 TRUE 0.544 -3 -0.966
 3073589 3073590 BamMC406DRAFT_4294 BamMC406DRAFT_4295 FALSE 0.493 88 -1.279
 3073590 3073591 BamMC406DRAFT_4295 BamMC406DRAFT_4296 TRUE 0.742 32 7.731
 3073591 3073592 BamMC406DRAFT_4296 BamMC406DRAFT_4297 TRUE 0.849 20 7.562
 3073592 3073593 BamMC406DRAFT_4297 BamMC406DRAFT_4298 TRUE 0.837 36 8.911
 3073593 3073594 BamMC406DRAFT_4298 BamMC406DRAFT_4299 TRUE 0.881 17 3.411
 3073594 3073595 BamMC406DRAFT_4299 BamMC406DRAFT_4300 FALSE 0.11 3 -3.48
 3073595 3073596 BamMC406DRAFT_4300 BamMC406DRAFT_4301 TRUE 0.774 -3 -0.605
 3073598 3073599 BamMC406DRAFT_4302 BamMC406DRAFT_4303 TRUE 0.926 -3 9.542
 3073600 3073601 BamMC406DRAFT_4871 BamMC406DRAFT_4304 FALSE 0 603 0
 3073601 3073602 BamMC406DRAFT_4304 BamMC406DRAFT_4305 FALSE 0.003 290 0
 3073602 3073603 BamMC406DRAFT_4305 BamMC406DRAFT_4306 FALSE 0.11 103 0
 3073603 3073604 BamMC406DRAFT_4306 BamMC406DRAFT_4307 FALSE 0.223 50 0
 3073604 3073605 BamMC406DRAFT_4307 BamMC406DRAFT_4308 FALSE 0.092 184 -0.231
 3073606 3073607 BamMC406DRAFT_4309 BamMC406DRAFT_4872 FALSE 0.02 79 0
 3073607 3073608 BamMC406DRAFT_4872 BamMC406DRAFT_4310 FALSE 0.014 108 0
 3073608 3073609 BamMC406DRAFT_4310 BamMC406DRAFT_4311 FALSE 0.028 59 0
 3073611 3073612 BamMC406DRAFT_4313 BamMC406DRAFT_4314 FALSE 0 420 0
 3073614 3073615 BamMC406DRAFT_4316 BamMC406DRAFT_4317 FALSE 0.055 -136 10.926
 3073615 3073616 BamMC406DRAFT_4317 BamMC406DRAFT_4318 FALSE 0.039 148 1.496
 3073617 3073618 BamMC406DRAFT_4319 BamMC406DRAFT_4320 FALSE 0.01 148 0
 3073618 3073619 BamMC406DRAFT_4320 BamMC406DRAFT_4321 FALSE 0.02 79 0.453
 3073619 3073620 BamMC406DRAFT_4321 BamMC406DRAFT_4322 FALSE 0.235 51 0.609
 3073620 3073621 BamMC406DRAFT_4322 BamMC406DRAFT_4873 FALSE 0.01 147 -0.598
 3073621 3073622 BamMC406DRAFT_4873 BamMC406DRAFT_4323 TRUE 0.976 0 16.423
 3073623 3073624 BamMC406DRAFT_4874 BamMC406DRAFT_4324 FALSE 0.007 -165 0
 3073624 3073625 BamMC406DRAFT_4324 BamMC406DRAFT_4325 TRUE 0.921 10 8
 3073625 3073626 BamMC406DRAFT_4325 BamMC406DRAFT_4326 FALSE 0.025 -16 0
 3073628 3073629 BamMC406DRAFT_4328 BamMC406DRAFT_4329 TRUE 0.962 75 24.436
 3073632 3073633 BamMC406DRAFT_4332 BamMC406DRAFT_4333 FALSE 0.023 71 0.089
 3073633 3073634 BamMC406DRAFT_4333 BamMC406DRAFT_4334 FALSE 0.014 112 0.089
 3073634 3073635 BamMC406DRAFT_4334 BamMC406DRAFT_4335 FALSE 0.085 -3 0.089
 3073635 3073636 BamMC406DRAFT_4335 BamMC406DRAFT_4336 FALSE 0.025 66 0.089
 3073636 3073637 BamMC406DRAFT_4336 BamMC406DRAFT_4337 FALSE 0.006 176 -4.789
 3073637 3073638 BamMC406DRAFT_4337 BamMC406DRAFT_4338 FALSE 0.182 -16 0.601
 3073638 3073639 BamMC406DRAFT_4338 BamMC406DRAFT_4339 FALSE 0.424 16 0.601
 3073641 3073642 BamMC406DRAFT_4341 BamMC406DRAFT_4342 FALSE 0.11 2 0.073
 3073642 3073643 BamMC406DRAFT_4342 BamMC406DRAFT_4343 FALSE 0.029 57 0
 3073643 3073644 BamMC406DRAFT_4343 BamMC406DRAFT_4344 FALSE 0.066 21 0
 3073644 3073645 BamMC406DRAFT_4344 BamMC406DRAFT_4345 FALSE 0 442 0
 3073645 3073646 BamMC406DRAFT_4345 BamMC406DRAFT_4346 FALSE 0.018 88 -1.042
 3073646 3073647 BamMC406DRAFT_4346 BamMC406DRAFT_4347 TRUE 0.608 -64 0
 3073647 3073648 BamMC406DRAFT_4347 BamMC406DRAFT_4875 FALSE 0.42 -309 0
 3073648 3073649 BamMC406DRAFT_4875 BamMC406DRAFT_4348 TRUE 0.967 -39 58.381
 3073649 3073650 BamMC406DRAFT_4348 BamMC406DRAFT_4349 FALSE 0.015 572 -27.415
 3073651 3073652 BamMC406DRAFT_4350 BamMC406DRAFT_4351 FALSE 0.015 99 -4.475
 3073655 3073656 BamMC406DRAFT_4353 BamMC406DRAFT_4354 FALSE 0.038 -7 0
 3073657 3073658 BamMC406DRAFT_4355 BamMC406DRAFT_4356 FALSE 0.03 56 -2.389
 3073659 3073660 BamMC406DRAFT_4357 BamMC406DRAFT_4358 FALSE 0 350 0.256
 3073662 3073663 BamMC406DRAFT_4360 BamMC406DRAFT_4877 FALSE 0.014 112 0
 3073663 3073664 BamMC406DRAFT_4877 BamMC406DRAFT_4878 FALSE 0 950 0
 3073669 3073670 BamMC406DRAFT_4363 BamMC406DRAFT_4364 FALSE 0.048 194 0.4
 3073670 3073671 BamMC406DRAFT_4364 BamMC406DRAFT_4365 TRUE 0.966 -3 -2.234
 3073671 3073672 BamMC406DRAFT_4365 BamMC406DRAFT_4366 TRUE 0.961 0 -8.637
 3073672 3073673 BamMC406DRAFT_4366 BamMC406DRAFT_4367 FALSE 0.023 -19 0.256
 3073673 3073674 BamMC406DRAFT_4367 BamMC406DRAFT_4368 FALSE 0.01 149 0.239
 3073674 3073675 BamMC406DRAFT_4368 BamMC406DRAFT_4369 FALSE 0.017 125 0.334
 3073675 3073676 BamMC406DRAFT_4369 BamMC406DRAFT_4370 FALSE 0.029 123 0.411
 3073676 3073677 BamMC406DRAFT_4370 BamMC406DRAFT_4371 FALSE 0.174 -3 0.4
 3073677 3073678 BamMC406DRAFT_4371 BamMC406DRAFT_4372 FALSE 0.052 -18 0.4
 3073678 3073679 BamMC406DRAFT_4372 BamMC406DRAFT_4373 TRUE 0.984 -3 15.378
 3073679 3073680 BamMC406DRAFT_4373 BamMC406DRAFT_4374 FALSE 0.082 -7 0.4
 3073680 3073681 BamMC406DRAFT_4374 BamMC406DRAFT_4375 FALSE 0.174 -6 0.494
 3073681 3073682 BamMC406DRAFT_4375 BamMC406DRAFT_4376 TRUE 0.951 25 6.832
 3073682 3073683 BamMC406DRAFT_4376 BamMC406DRAFT_4377 FALSE 0.011 245 -0.938
 3073683 3073684 BamMC406DRAFT_4377 BamMC406DRAFT_4881 FALSE 0 1459 0
 3073684 3073685 BamMC406DRAFT_4881 BamMC406DRAFT_4882 FALSE 0.059 25 0
 3073685 3073686 BamMC406DRAFT_4882 BamMC406DRAFT_4883 FALSE 0 1063 0
 3073686 3073687 BamMC406DRAFT_4883 BamMC406DRAFT_4884 FALSE 0 805 0.083
 3073687 3073688 BamMC406DRAFT_4884 BamMC406DRAFT_4885 FALSE 0.077 16 0
 3073689 3073690 BamMC406DRAFT_4378 BamMC406DRAFT_4379 FALSE 0.287 -3 0.473
 3073690 3073691 BamMC406DRAFT_4379 BamMC406DRAFT_4380 TRUE 0.988 4 11.675
 3073691 3073692 BamMC406DRAFT_4380 BamMC406DRAFT_4381 FALSE 0 370 -1.35
 3073692 3073693 BamMC406DRAFT_4381 BamMC406DRAFT_4382 FALSE 0.002 406 -5.67
 3073693 3073694 BamMC406DRAFT_4382 BamMC406DRAFT_4383 TRUE 0.998 3 60.953
 3073697 3073698 BamMC406DRAFT_4887 BamMC406DRAFT_4385 FALSE 0.023 71 -7.715
 3073700 3073701 BamMC406DRAFT_4888 BamMC406DRAFT_4387 FALSE 0.017 -777 0
 3073703 3073704 BamMC406DRAFT_4389 BamMC406DRAFT_4390 FALSE 0.01 250 -0.57
 3073704 3073705 BamMC406DRAFT_4390 BamMC406DRAFT_4391 TRUE 0.503 117 7.016
 3073705 3073706 BamMC406DRAFT_4391 BamMC406DRAFT_4392 TRUE 0.983 6 25.272
 3073706 3073707 BamMC406DRAFT_4392 BamMC406DRAFT_4393 TRUE 0.975 -13 25.878
 3073707 3073708 BamMC406DRAFT_4393 BamMC406DRAFT_4394 TRUE 0.739 50 1.558
 3073708 3073709 BamMC406DRAFT_4394 BamMC406DRAFT_4395 TRUE 0.941 32 5.042
 3073709 3073710 BamMC406DRAFT_4395 BamMC406DRAFT_4889 TRUE 0.94 -3 3.948
 3073711 3073712 BamMC406DRAFT_4396 BamMC406DRAFT_4397 FALSE 0.001 257 -0.682
 3073712 3073713 BamMC406DRAFT_4397 BamMC406DRAFT_4398 TRUE 0.88 -3 6.877
 3073713 3073714 BamMC406DRAFT_4398 BamMC406DRAFT_4891 FALSE 0 1185 -0.586
 3073714 3073715 BamMC406DRAFT_4891 BamMC406DRAFT_4890 TRUE 0.895 -3 25.488
 3073715 3073716 BamMC406DRAFT_4890 BamMC406DRAFT_4399 TRUE 0.87 37 23.374
 3073717 3073718 BamMC406DRAFT_4400 BamMC406DRAFT_4401 TRUE 0.986 -3 47.728
 3073721 3073722 BamMC406DRAFT_4404 BamMC406DRAFT_4405 FALSE 0.075 126 0.536
 3073722 3073723 BamMC406DRAFT_4405 BamMC406DRAFT_4892 FALSE 0.004 -889 0
 3073723 3073724 BamMC406DRAFT_4892 BamMC406DRAFT_4406 FALSE 0.02 80 0
 3073725 3073726 BamMC406DRAFT_4407 BamMC406DRAFT_4408 TRUE 0.816 -3 5.406
 3073735 3073736 BamMC406DRAFT_4417 BamMC406DRAFT_4418 TRUE 0.612 59 3.498
 3073736 3073737 BamMC406DRAFT_4418 BamMC406DRAFT_4419 FALSE 0.018 88 -0.701
 3073737 3073738 BamMC406DRAFT_4419 BamMC406DRAFT_4420 FALSE 0.015 100 1.112
 3073738 3073739 BamMC406DRAFT_4420 BamMC406DRAFT_4421 FALSE 0.039 208 -0.064
 3073740 3073741 BamMC406DRAFT_4422 BamMC406DRAFT_4423 FALSE 0.05 75 -2.696
 3073741 3073742 BamMC406DRAFT_4423 BamMC406DRAFT_4424 FALSE 0.001 265 4.014
 3073742 3073743 BamMC406DRAFT_4424 BamMC406DRAFT_4425 TRUE 0.716 73 7.856
 3073743 3073744 BamMC406DRAFT_4425 BamMC406DRAFT_4426 FALSE 0.074 263 4.189
 3073744 3073745 BamMC406DRAFT_4426 BamMC406DRAFT_4893 TRUE 0.793 -3 19.639
 3073745 3073746 BamMC406DRAFT_4893 BamMC406DRAFT_4427 TRUE 0.614 61 5.085
 3073746 3073747 BamMC406DRAFT_4427 BamMC406DRAFT_4428 FALSE 0.026 172 5.452
 3073747 3073748 BamMC406DRAFT_4428 BamMC406DRAFT_4429 FALSE 0.272 37 0.453
 3073748 3073749 BamMC406DRAFT_4429 BamMC406DRAFT_4430 TRUE 0.988 35 87.31
 3073749 3073750 BamMC406DRAFT_4430 BamMC406DRAFT_4431 TRUE 0.977 -30 129.016
 3073755 3073756 BamMC406DRAFT_4435 BamMC406DRAFT_4436 FALSE 0.243 73 0.209
 3073758 3073759 BamMC406DRAFT_4438 BamMC406DRAFT_4439 TRUE 0.611 -3 -0.096
 3073759 3073760 BamMC406DRAFT_4439 BamMC406DRAFT_4440 TRUE 0.95 -3 17.413
 3073760 3073761 BamMC406DRAFT_4440 BamMC406DRAFT_4441 FALSE 0.003 204 0.334
 3073761 3073762 BamMC406DRAFT_4441 BamMC406DRAFT_4442 FALSE 0.003 216 0
 3073762 3073763 BamMC406DRAFT_4442 BamMC406DRAFT_4443 FALSE 0.183 62 -0.692
 3073763 3073764 BamMC406DRAFT_4443 BamMC406DRAFT_4444 FALSE 0.043 178 -0.104
 3073765 3073766 BamMC406DRAFT_4445 BamMC406DRAFT_4446 TRUE 0.998 3 79.34
 3073769 3073770 BamMC406DRAFT_4896 BamMC406DRAFT_4448 FALSE 0.058 26 0
 3073770 3073771 BamMC406DRAFT_4448 BamMC406DRAFT_4449 TRUE 0.662 83 0
 3073771 3073772 BamMC406DRAFT_4449 BamMC406DRAFT_4450 TRUE 0.982 0 4.7
 3073773 3073774 BamMC406DRAFT_4451 BamMC406DRAFT_4452 TRUE 0.53 3 -2.807
 3073774 3073775 BamMC406DRAFT_4452 BamMC406DRAFT_4453 FALSE 0.192 60 0
 3073779 3073780 BamMC406DRAFT_4457 BamMC406DRAFT_4458 FALSE 0.196 -3 -0.602
 3073780 3073781 BamMC406DRAFT_4458 BamMC406DRAFT_4459 FALSE 0.232 47 0
 3073782 3073783 BamMC406DRAFT_4460 BamMC406DRAFT_4897 FALSE 0.298 -147 4.124
 3073784 3073785 BamMC406DRAFT_4461 BamMC406DRAFT_4462 TRUE 0.596 -3 0
 3073785 3073786 BamMC406DRAFT_4462 BamMC406DRAFT_4463 FALSE 0.169 149 -0.533
 3073786 3073787 BamMC406DRAFT_4463 BamMC406DRAFT_4464 FALSE 0.182 110 -1.261
 3073787 3073788 BamMC406DRAFT_4464 BamMC406DRAFT_4465 FALSE 0.017 93 0.083
 3073789 3073790 BamMC406DRAFT_4466 BamMC406DRAFT_4467 FALSE 0.3 145 0.073
 3073790 3073791 BamMC406DRAFT_4467 BamMC406DRAFT_4468 FALSE 0.4 -3 -0.06
 3073791 3073792 BamMC406DRAFT_4468 BamMC406DRAFT_4469 FALSE 0.015 101 0.073
 3073792 3073793 BamMC406DRAFT_4469 BamMC406DRAFT_4470 FALSE 0.003 214 0
 3073793 3073794 BamMC406DRAFT_4470 BamMC406DRAFT_4471 FALSE 0.434 -3 0
 3073798 3073799 BamMC406DRAFT_4475 BamMC406DRAFT_4476 FALSE 0.028 59 0.083
 3073799 3073800 BamMC406DRAFT_4476 BamMC406DRAFT_4477 FALSE 0.003 205 0
 3073800 3073801 BamMC406DRAFT_4477 BamMC406DRAFT_4478 TRUE 0.868 15 2.485
 3073801 3073802 BamMC406DRAFT_4478 BamMC406DRAFT_4479 FALSE 0.476 -3 0.209
 3073802 3073803 BamMC406DRAFT_4479 BamMC406DRAFT_4480 TRUE 0.556 15 0.209
 3073803 3073804 BamMC406DRAFT_4480 BamMC406DRAFT_4481 TRUE 0.982 -3 9.242
 3073804 3073805 BamMC406DRAFT_4481 BamMC406DRAFT_4482 TRUE 0.996 2 102.368
 3073805 3073806 BamMC406DRAFT_4482 BamMC406DRAFT_4483 FALSE 0.014 238 -3.054
 3073807 3073808 BamMC406DRAFT_4484 BamMC406DRAFT_4485 FALSE 0.024 152 -0.308
 3073808 3073809 BamMC406DRAFT_4485 BamMC406DRAFT_4486 TRUE 0.751 122 0.559
 3073809 3073810 BamMC406DRAFT_4486 BamMC406DRAFT_4487 TRUE 0.883 -10 0.559
 3073811 3073812 BamMC406DRAFT_4488 BamMC406DRAFT_4489 FALSE 0.026 200 0.073
 3073812 3073813 BamMC406DRAFT_4489 BamMC406DRAFT_4490 FALSE 0.09 119 0.073
 3073813 3073814 BamMC406DRAFT_4490 BamMC406DRAFT_4491 FALSE 0.001 314 0
 3073814 3073815 BamMC406DRAFT_4491 BamMC406DRAFT_4492 FALSE 0.007 168 0
 3073815 3073816 BamMC406DRAFT_4492 BamMC406DRAFT_4493 FALSE 0 331 0
 3073818 3073819 BamMC406DRAFT_4495 BamMC406DRAFT_4898 FALSE 0.038 116 0.022
 3073819 3073820 BamMC406DRAFT_4898 BamMC406DRAFT_4496 TRUE 0.922 24 13.588
 3073821 3073822 BamMC406DRAFT_4497 BamMC406DRAFT_4899 TRUE 0.787 -48 2.847
 3073822 3073823 BamMC406DRAFT_4899 BamMC406DRAFT_4498 FALSE 0.036 45 0
 3073825 3073826 BamMC406DRAFT_4500 BamMC406DRAFT_4502 FALSE 0.257 33 -0.078
 3073827 3073828 BamMC406DRAFT_4501 BamMC406DRAFT_4503