VIMSS Operon Predictions for Burkholderia mallei NCTC 10229

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2109979 2109980 BMA10299_0001 BMA10299_0002 FALSE 0.27 39 0
 2109980 2109981 BMA10299_0002 BMA10299_0003 rrsA FALSE 0.003 469 0
 2109981 2109982 BMA10299_0003 BMA10299_0004 rrsA FALSE 0.259 83 0
 2109982 2109983 BMA10299_0004 BMA10299_0005 FALSE 0.261 35 0
 2109983 2109984 BMA10299_0005 BMA10299_0006 rrlA FALSE 0.008 354 0
 2109984 2109985 BMA10299_0006 BMA10299_0007 rrlA rrfA FALSE 0.07 182 0
 2109986 2109987 BMA10299_0008 BMA10299_0009 FALSE 0.405 24 0
 2109987 2109988 BMA10299_0009 BMA10299_0010 FALSE 0.134 146 0
 2109988 2109989 BMA10299_0010 BMA10299_0011 FALSE 0.238 60 -2.685
 2109989 2109990 BMA10299_0011 BMA10299_0012 TRUE 0.953 -3 27.142
 2109990 2109991 BMA10299_0012 BMA10299_0013 TRUE 0.953 60 32.511
 2109991 2109992 BMA10299_0013 BMA10299_0014 TRUE 0.942 60 20.587
 2109992 2109993 BMA10299_0014 BMA10299_0015 uvrB FALSE 0.031 224 -4.237
 2109994 2109995 BMA10299_0016 BMA10299_0017 tyrB-2 FALSE 0.374 114 0
 2109997 2109998 BMA10299_0019 BMA10299_0020 FALSE 0.075 149 -9.293
 2110000 2110001 BMA10299_0022 BMA10299_0023 FALSE 0.405 24 0
 2110002 2110003 BMA10299_0024 BMA10299_0025 FALSE 0.045 207 0
 2110003 2110004 BMA10299_0025 BMA10299_0026 FALSE 0.282 22 0
 2110004 2110005 BMA10299_0026 BMA10299_0027 FALSE 0.405 24 0
 2110005 2110006 BMA10299_0027 BMA10299_0028 FALSE 0.328 66 0
 2110006 2110007 BMA10299_0028 BMA10299_0029 glsA FALSE 0.058 201 0.002
 2110008 2110009 BMA10299_0030 BMA10299_0031 FALSE 0.303 123 0.021
 2110015 2110016 BMA10299_0037 BMA10299_0038 FALSE 0.289 101 -8.291
 2110016 2110017 BMA10299_0038 BMA10299_0039 FALSE 0.493 96 0.187
 2110018 2110019 BMA10299_0040 BMA10299_0041 TRUE 0.757 0 0.069
 2110019 2110020 BMA10299_0041 BMA10299_0042 TRUE 0.576 3 0.002
 2110021 2110022 BMA10299_0043 BMA10299_0044 FALSE 0.364 47 0.005
 2110022 2110023 BMA10299_0044 BMA10299_0045 FALSE 0.326 41 0.005
 2110023 2110024 BMA10299_0045 BMA10299_0046 FALSE 0.047 215 0.002
 2110024 2110025 BMA10299_0046 BMA10299_0047 FALSE 0.001 978 0
 2110025 2110026 BMA10299_0047 BMA10299_0048 FALSE 0.205 108 0
 2110027 2110028 BMA10299_0049 BMA10299_0050 TRUE 0.944 -3 1.433
 2110029 2110030 BMA10299_0051 BMA10299_0052 FALSE 0.002 386 -22.161
 2110031 2110032 BMA10299_0053 BMA10299_0054 FALSE 0.277 90 0
 2110033 2110034 BMA10299_0055 BMA10299_0056 FALSE 0.034 259 0.014
 2110034 2110035 BMA10299_0056 BMA10299_0057 FALSE 0.36 85 0.014
 2110035 2110036 BMA10299_0057 BMA10299_0058 TRUE 0.612 64 0.164
 2110036 2110037 BMA10299_0058 BMA10299_0059 FALSE 0.444 -3 0
 2110037 2110038 BMA10299_0059 BMA10299_0060 FALSE 0.444 -3 0
 2110038 2110039 BMA10299_0060 BMA10299_0061 FALSE 0.053 236 0.018
 2110039 2110040 BMA10299_0061 BMA10299_0062 FALSE 0.329 58 0
 2110040 2110041 BMA10299_0062 BMA10299_0063 FALSE 0.382 19 0.007
 2110041 2110042 BMA10299_0063 BMA10299_0064 FALSE 0.017 243 0.012
 2110042 2110043 BMA10299_0064 BMA10299_0065 FALSE 0.001 617 0.038
 2110043 2110044 BMA10299_0065 BMA10299_0066 FALSE 0.03 380 0
 2110044 2110045 BMA10299_0066 BMA10299_0067 FALSE 0.415 31 0
 2110045 2110046 BMA10299_0067 BMA10299_0068 FALSE 0.405 24 0
 2110049 2110050 BMA10299_0071 BMA10299_0072 FALSE 0.375 73 0.012
 2110050 2110051 BMA10299_0072 BMA10299_0073 TRUE 0.547 51 0.012
 2110051 2110052 BMA10299_0073 BMA10299_0074 FALSE 0.339 77 0.007
 2110053 2110054 BMA10299_0075 BMA10299_0076 FALSE 0.002 401 0.306
 2110054 2110055 BMA10299_0076 BMA10299_0077 TRUE 0.655 29 19.703
 2110055 2110056 BMA10299_0077 BMA10299_0078 TRUE 0.692 22 3.134
 2110057 2110058 BMA10299_0079 BMA10299_0080 TRUE 0.593 64 0.016
 2110059 2110060 BMA10299_0081 BMA10299_0082 asnB-1 FALSE 0.053 218 -12.042
 2110061 2110062 BMA10299_0083 BMA10299_0084 FALSE 0.008 353 0
 2110062 2110063 BMA10299_0084 BMA10299_0085 iorB FALSE 0.238 108 0.002
 2110063 2110064 BMA10299_0085 BMA10299_0086 iorB iorA TRUE 0.999 3 236.727
 2110069 2110070 BMA10299_0091 BMA10299_0092 TRUE 0.961 5 6.769
 2110070 2110071 BMA10299_0092 BMA10299_0093 TRUE 0.773 88 -1.031
 2110071 2110072 BMA10299_0093 BMA10299_0094 FALSE 0.253 85 0
 2110073 2110074 BMA10299_0095 BMA10299_0096 TRUE 0.978 1 30.337
 2110075 2110076 BMA10299_0097 BMA10299_0098 FALSE 0.237 24 -3.327
 2110078 2110079 BMA10299_0100 BMA10299_0101 TRUE 0.996 -3 51.138
 2110079 2110080 BMA10299_0101 BMA10299_0102 hpaE TRUE 0.959 24 50.988
 2110080 2110081 BMA10299_0102 BMA10299_0103 hpaE hpaD TRUE 0.943 70 71.051
 2110081 2110082 BMA10299_0103 BMA10299_0104 hpaD hpaF TRUE 0.975 58 64.413
 2110082 2110083 BMA10299_0104 BMA10299_0105 hpaF hpaH TRUE 0.949 23 57.827
 2110084 2110085 BMA10299_0106 BMA10299_0107 FALSE 0.32 68 0
 2110087 2110088 BMA10299_0109 BMA10299_0110 FALSE 0.253 30 0
 2110088 2110089 BMA10299_0110 BMA10299_0111 FALSE 0.111 156 0
 2110089 2110090 BMA10299_0111 BMA10299_0112 TRUE 0.948 -33 56.9
 2110090 2110091 BMA10299_0112 BMA10299_0113 TRUE 0.977 100 50.097
 2110092 2110093 BMA10299_0114 BMA10299_0115 tctE TRUE 0.972 -3 45.352
 2110094 2110095 BMA10299_0116 BMA10299_0117 FALSE 0.493 50 0
 2110095 2110096 BMA10299_0117 BMA10299_0118 FALSE 0.405 24 0
 2110096 2110097 BMA10299_0118 BMA10299_0119 FALSE 0.328 66 0
 2110097 2110098 BMA10299_0119 BMA10299_0120 TRUE 0.653 1 0.015
 2110099 2110100 BMA10299_0121 BMA10299_0122 FALSE 0.361 118 0.024
 2110100 2110101 BMA10299_0122 BMA10299_0124 FALSE 0.453 29 0.024
 2110105 2110106 BMA10299_0127 BMA10299_0128 FALSE 0.309 87 0.01
 2110106 2110107 BMA10299_0128 BMA10299_0129 FALSE 0.001 551 0.284
 2110107 2110108 BMA10299_0129 BMA10299_0130 FALSE 0.336 148 0.284
 2110108 2110109 BMA10299_0130 BMA10299_0131 osmE TRUE 0.577 126 1.578
 2110110 2110111 BMA10299_0132 BMA10299_0133 FALSE 0.015 343 -15.15
 2110113 2110114 BMA10299_0135 BMA10299_0136 TRUE 0.644 15 0.135
 2110114 2110115 BMA10299_0136 BMA10299_0137 TRUE 0.658 43 0.14
 2110117 2110118 BMA10299_0139 BMA10299_0140 FALSE 0.28 78 0
 2110118 2110119 BMA10299_0140 BMA10299_0141 FALSE 0.003 393 0.002
 2110119 2110120 BMA10299_0141 BMA10299_0142 TRUE 0.562 7 0.002
 2110120 2110121 BMA10299_0142 BMA10299_0143 TRUE 0.903 58 1.085
 2110121 2110122 BMA10299_0143 BMA10299_0144 TRUE 0.932 3 13.655
 2110122 2110123 BMA10299_0144 BMA10299_0145 TRUE 0.795 78 7.006
 2110129 2110130 BMA10299_0151 BMA10299_0152 FALSE 0.319 151 0.285
 2110130 2110131 BMA10299_0152 BMA10299_0153 FALSE 0.444 -3 0
 2110134 2110135 BMA10299_0156 BMA10299_0157 mmsA-2 TRUE 0.916 70 33.356
 2110135 2110136 BMA10299_0157 BMA10299_0158 mmsA-2 TRUE 0.637 12 0.022
 2110137 2110138 BMA10299_0159 BMA10299_0160 FALSE 0.405 24 0
 2110139 2110140 BMA10299_0161 BMA10299_0162 FALSE 0.004 427 0
 2110140 2110141 BMA10299_0162 BMA10299_0163 TRUE 0.525 0 0
 2110141 2110142 BMA10299_0163 BMA10299_0164 FALSE 0.005 343 0.017
 2110142 2110143 BMA10299_0164 BMA10299_0165 FALSE 0.334 27 0.012
 2110143 2110144 BMA10299_0165 BMA10299_0166 FALSE 0.045 207 0
 2110144 2110145 BMA10299_0166 BMA10299_0167 FALSE 0.086 170 0
 2110145 2110146 BMA10299_0167 BMA10299_0168 FALSE 0.228 201 1.338
 2110146 2110147 BMA10299_0168 BMA10299_0169 FALSE 0.226 -48 0.007
 2110149 2110150 BMA10299_0171 BMA10299_0172 FALSE 0.189 166 0.022
 2110150 2110151 BMA10299_0172 BMA10299_0173 FALSE 0.407 39 -9.868
 2110151 2110152 BMA10299_0173 BMA10299_0174 FALSE 0.021 294 0.33
 2110152 2110153 BMA10299_0174 BMA10299_0175 TRUE 0.969 4 0.33
 2110153 2110154 BMA10299_0175 BMA10299_0176 TRUE 0.971 -3 3.23
 2110155 2110156 BMA10299_0177 BMA10299_0178 FALSE 0.019 225 -4.767
 2110156 2110157 BMA10299_0178 BMA10299_0179 betA FALSE 0 1080 -82.671
 2110157 2110158 BMA10299_0179 BMA10299_0180 betA betB TRUE 0.943 20 209.104
 2110158 2110159 BMA10299_0180 BMA10299_0181 betB betI TRUE 0.919 43 127.401
 2110160 2110161 BMA10299_0182 BMA10299_0183 FALSE 0.405 24 0
 2110161 2110162 BMA10299_0183 BMA10299_0184 rhlA-2 FALSE 0.092 167 0
 2110162 2110163 BMA10299_0184 BMA10299_0185 rhlA-2 rhlB-2 FALSE 0.035 222 0
 2110163 2110164 BMA10299_0185 BMA10299_0186 rhlB-2 TRUE 0.623 -3 0
 2110164 2110165 BMA10299_0186 BMA10299_0187 FALSE 0.188 -48 0
 2110165 2110166 BMA10299_0187 BMA10299_0188 FALSE 0.268 23 0
 2110166 2110167 BMA10299_0188 BMA10299_0189 FALSE 0.324 67 0
 2110167 2110168 BMA10299_0189 BMA10299_0190 FALSE 0.175 126 0
 2110168 2110169 BMA10299_0190 BMA10299_0191 FALSE 0.444 -3 0
 2110169 2110170 BMA10299_0191 BMA10299_0192 FALSE 0.007 481 0
 2110171 2110172 BMA10299_0193 BMA10299_0194 TRUE 0.567 9 0.01
 2110173 2110174 BMA10299_0195 BMA10299_0196 TRUE 0.845 115 11.894
 2110174 2110175 BMA10299_0196 BMA10299_0197 TRUE 0.784 -3 0.323
 2110175 2110176 BMA10299_0197 BMA10299_0198 FALSE 0.468 121 0.323
 2110176 2110177 BMA10299_0198 BMA10299_0199 TRUE 0.979 8 44.309
 2110178 2110179 BMA10299_0200 BMA10299_0201 FALSE 0.14 193 0.029
 2110180 2110181 BMA10299_0202 BMA10299_0203 TRUE 0.948 -10 77.923
 2110181 2110182 BMA10299_0203 BMA10299_0204 TRUE 0.993 2 210.194
 2110182 2110183 BMA10299_0204 BMA10299_0205 FALSE 0.16 41 -10.247
 2110183 2110184 BMA10299_0205 BMA10299_0206 FALSE 0.319 115 0.021
 2110187 2110188 BMA10299_0209 BMA10299_0210 FALSE 0.062 179 -9.963
 2110188 2110189 BMA10299_0210 BMA10299_0211 TRUE 0.827 -3 0.33
 2110189 2110190 BMA10299_0211 BMA10299_0212 FALSE 0.085 181 0.33
 2110190 2110191 BMA10299_0212 BMA10299_0213 FALSE 0.478 52 10.295
 2110191 2110192 BMA10299_0213 BMA10299_0214 TRUE 0.573 111 13.276
 2110193 2110194 BMA10299_0215 BMA10299_0216 FALSE 0.214 137 0.012
 2110196 2110197 BMA10299_0218 BMA10299_0219 TRUE 0.582 34 0.323
 2110199 2110200 BMA10299_0221 BMA10299_0222 TRUE 0.661 59 0.323
 2110200 2110201 BMA10299_0222 BMA10299_0223 TRUE 0.663 61 0.323
 2110201 2110202 BMA10299_0223 BMA10299_0224 FALSE 0.077 140 0.251
 2110202 2110203 BMA10299_0224 BMA10299_0225 FALSE 0.002 588 0.289
 2110203 2110204 BMA10299_0225 BMA10299_0226 TRUE 0.76 -3 0.323
 2110204 2110205 BMA10299_0226 BMA10299_0227 ileS-2 TRUE 0.576 84 0.323
 2110205 2110206 BMA10299_0227 BMA10299_0228 ileS-2 FALSE 0.001 633 0.125
 2110207 2110208 BMA10299_0229 BMA10299_0230 FALSE 0.001 488 -5.061
 2110208 2110209 BMA10299_0230 BMA10299_0231 FALSE 0.076 148 -3.585
 2110209 2110210 BMA10299_0231 BMA10299_0232 FALSE 0.492 72 0.022
 2110213 2110214 BMA10299_0235 BMA10299_0236 TRUE 0.946 -3 10.515
 2110214 2110215 BMA10299_0236 BMA10299_0237 TRUE 0.946 41 61.674
 2110215 2110216 BMA10299_0237 BMA10299_0238 TRUE 0.723 204 63.635
 2110216 2110217 BMA10299_0238 BMA10299_0239 TRUE 0.639 -3 0.022
 2110217 2110218 BMA10299_0239 BMA10299_0240 FALSE 0.481 -6 0.022
 2110218 2110219 BMA10299_0240 BMA10299_0241 TRUE 0.996 8 126.368
 2110219 2110220 BMA10299_0241 BMA10299_0242 TRUE 0.932 0 0.326
 2110220 2110221 BMA10299_0242 BMA10299_0243 TRUE 0.9 -3 0.295
 2110222 2110223 BMA10299_0244 BMA10299_0245 pcaG pcaH TRUE 0.999 3 178.913
 2110228 2110229 BMA10299_0250 BMA10299_0251 FALSE 0.478 15 0.012
 2110229 2110230 BMA10299_0251 BMA10299_0252 FALSE 0.241 -27 0.002
 2110230 2110231 BMA10299_0252 BMA10299_0253 FALSE 0.002 459 -5.373
 2110232 2110233 BMA10299_0254 BMA10299_0255 FALSE 0.496 80 0.029
 2110235 2110236 BMA10299_0257 BMA10299_0258 TRUE 0.573 9 0.01
 2110236 2110237 BMA10299_0258 BMA10299_0259 FALSE 0.007 328 0.01
 2110240 2110241 BMA10299_0262 BMA10299_0263 FALSE 0.405 24 0
 2110242 2110243 BMA10299_0264 BMA10299_0265 FALSE 0.013 297 0
 2110243 2110244 BMA10299_0265 BMA10299_0266 FALSE 0.329 58 0
 2110244 2110245 BMA10299_0266 BMA10299_0267 FALSE 0.069 153 0.04
 2110246 2110247 BMA10299_0268 BMA10299_0270 ggt TRUE 0.529 3 0
 2110249 2110250 BMA10299_0271 BMA10299_0272 FALSE 0.114 247 1.002
 2110252 2110253 BMA10299_0274 BMA10299_0275 TRUE 0.903 -3 1.01
 2110253 2110254 BMA10299_0275 BMA10299_0276 TRUE 0.85 13 1.01
 2110254 2110255 BMA10299_0276 BMA10299_0277 TRUE 0.782 14 0.739
 2110255 2110256 BMA10299_0277 BMA10299_0278 FALSE 0.001 400 0.746
 2110258 2110259 BMA10299_0280 BMA10299_0281 FALSE 0.277 91 0.002
 2110259 2110260 BMA10299_0281 BMA10299_0282 FALSE 0.415 31 0
 2110260 2110261 BMA10299_0282 BMA10299_0283 FALSE 0.405 24 0
 2110261 2110262 BMA10299_0283 BMA10299_0285 FALSE 0.317 69 0
 2110264 2110265 BMA10299_0286 BMA10299_0287 FALSE 0.148 197 0.156
 2110266 2110267 BMA10299_0288 BMA10299_0289 FALSE 0.364 130 0.014