VIMSS Operon Predictions for Bacillus thuringiensis str. Al Hakam

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2115665 2115666 BALH_0001 BALH_0002 dnaA dnaN TRUE 0.969 179 891.198
 2115666 2115667 BALH_0002 BALH_0003 dnaN TRUE 0.907 116 62.029
 2115667 2115668 BALH_0003 BALH_0004 recF TRUE 0.986 13 73.243
 2115668 2115669 BALH_0004 BALH_0005 recF gyrB TRUE 0.996 24 172.813
 2115669 2115670 BALH_0005 BALH_0006 gyrB gyrA TRUE 0.991 86 218.932
 2115670 2115671 BALH_0006 BALH_r16S01 gyrA FALSE 0.027 242 0
 2115671 2115672 BALH_r16S01 BALH_tIle01 FALSE 0.03 231 0
 2115672 2115673 BALH_tIle01 BALH_tAla05 FALSE 0.404 6 0
 2115673 2115674 BALH_tAla05 BALH_r23S01 FALSE 0.152 93 0
 2115674 2115675 BALH_r23S01 BALH_r5S01 FALSE 0.247 47 0
 2115677 2115678 BALH_0009 BALH_0010 guaB dacA FALSE 0.258 90 -6.221
 2115678 2115679 BALH_0010 BALH_0011 dacA pdxA FALSE 0.141 155 -5.516
 2115679 2115680 BALH_0011 BALH_0012 pdxA pdxT TRUE 0.997 1 276.803
 2115680 2115681 BALH_0012 BALH_0013 pdxT serS FALSE 0.231 328 -24.667
 2115681 2115682 BALH_0013 BALH_tSer05 serS FALSE 0.08 157 0
 2115682 2115683 BALH_tSer05 BALH_0014 FALSE 0.424 5 0
 2115684 2115685 BALH_0015 BALH_0016 dck dgk TRUE 0.996 3 26.911
 2115685 2115686 BALH_0016 BALH_0017 dgk pncA FALSE 0.241 108 -3.851
 2115687 2115688 BALH_0018 BALH_0019 dnaX FALSE 0.115 477 -2.672
 2115688 2115689 BALH_0019 BALH_0020 dnaX TRUE 0.988 23 118.103
 2115689 2115690 BALH_0020 BALH_0021 recR TRUE 0.99 15 1001.081
 2115690 2115691 BALH_0021 BALH_0022 recR TRUE 0.955 15 16.956
 2115691 2115692 BALH_0022 BALH_0023 bofA FALSE 0.405 149 6.146
 2115692 2115693 BALH_0023 BALH_r16S02 bofA FALSE 0.036 219 0
 2115693 2115694 BALH_r16S02 BALH_tIle03 FALSE 0.03 231 0
 2115694 2115695 BALH_tIle03 BALH_tAla03 FALSE 0.404 6 0
 2115695 2115696 BALH_tAla03 BALH_r23S02 FALSE 0.153 92 0
 2115696 2115697 BALH_r23S02 BALH_r5S02 FALSE 0.247 47 0
 2115697 2115698 BALH_r5S02 BALH_0025 cad FALSE 0.004 440 0
 2115698 2115699 BALH_0025 BALH_0026 cad tmk TRUE 0.986 2 24.591
 2115699 2115700 BALH_0026 BALH_0027 tmk holB TRUE 0.987 36 174.072
 2115700 2115701 BALH_0027 BALH_0028 holB TRUE 0.996 -3 73.338
 2115701 2115702 BALH_0028 BALH_0029 TRUE 0.993 0 55.473
 2115702 2115703 BALH_0029 BALH_0030 TRUE 0.899 121 20.48
 2115703 2115704 BALH_0030 BALH_0031 TRUE 0.997 -64 6.31
 2115704 2115705 BALH_0031 BALH_0032 cobA TRUE 0.975 -31 2.455
 2115707 2115708 BALH_0034 BALH_0035 metS TRUE 0.938 166 224.379
 2115708 2115709 BALH_0035 BALH_0036 rnmV TRUE 0.904 203 78.092
 2115709 2115710 BALH_0036 BALH_0037 rnmV ksgA TRUE 0.997 -3 111.783
 2115710 2115711 BALH_0037 BALH_0038 ksgA TRUE 0.921 111 4.806
 2115711 2115712 BALH_0038 BALH_0039 veg TRUE 0.507 239 19.904
 2115712 2115713 BALH_0039 BALH_0040 veg ispE FALSE 0.058 459 30.079
 2115713 2115714 BALH_0040 BALH_0041 ispE purR TRUE 0.968 55 26.308
 2115714 2115715 BALH_0041 BALH_0042 purR TRUE 0.633 114 6.888
 2115715 2115716 BALH_0042 BALH_0043 spoVG TRUE 0.569 99 2.896
 2115716 2115717 BALH_0043 BALH_0044 spoVG gcaD FALSE 0.309 307 24.968
 2115717 2115718 BALH_0044 BALH_0045 gcaD prs TRUE 0.984 19 166.724
 2115718 2115719 BALH_0045 BALH_0046 prs spoVC TRUE 0.974 1 478.228
 2115719 2115720 BALH_0046 BALH_0047 spoVC TRUE 0.589 71 4.994
 2115720 2115721 BALH_0047 BALH_0048 mfd TRUE 0.752 13 4.626
 2115721 2115722 BALH_0048 BALH_0049 mfd spoVT TRUE 0.949 136 10.222
 2115722 2115723 BALH_0049 BALH_0051 spoVT spoVB FALSE 0.174 231 5.519
 2115723 2115724 BALH_0051 BALH_0053 spoVB mazG TRUE 0.801 13 7.077
 2115724 2115725 BALH_0053 BALH_0054 mazG hslR TRUE 0.998 -30 28.737
 2115725 2115726 BALH_0054 BALH_0055 hslR TRUE 0.959 41 18.479
 2115726 2115727 BALH_0055 BALH_0056 TRUE 0.988 -3 7.758
 2115727 2115728 BALH_0056 BALH_0057 divIC TRUE 0.98 -42 6.015
 2115728 2115729 BALH_0057 BALH_0058 divIC TRUE 0.726 88 17.635
 2115729 2115730 BALH_0058 BALH_tMet02 FALSE 0.075 161 0
 2115730 2115731 BALH_tMet02 BALH_tGlu06 FALSE 0.333 11 0
 2115731 2115732 BALH_tGlu06 BALH_0060 spoIIE FALSE 0.022 257 0
 2115732 2115733 BALH_0060 BALH_0061 spoIIE mesJ TRUE 0.551 222 16.269
 2115733 2115734 BALH_0061 BALH_0062 mesJ hpt TRUE 0.997 -3 132.417
 2115734 2115735 BALH_0062 BALH_0063 hpt ftsH TRUE 0.965 86 151.454
 2115735 2115736 BALH_0063 BALH_0064 ftsH TRUE 0.809 225 -4.772
 2115736 2115737 BALH_0064 BALH_0065 hslO TRUE 0.891 7 5.574
 2115737 2115738 BALH_0065 BALH_0066 hslO cysK TRUE 0.652 87 -9.045
 2115738 2115739 BALH_0066 BALH_0067 cysK pabB FALSE 0.396 176 -10.065
 2115739 2115740 BALH_0067 BALH_0068 pabB pabA TRUE 0.999 -3 219.856
 2115740 2115741 BALH_0068 BALH_0069 pabA pabC TRUE 0.998 -6 5.94
 2115741 2115742 BALH_0069 BALH_0070 pabC folP TRUE 0.999 -58 5.94
 2115742 2115743 BALH_0070 BALH_0071 folP folB TRUE 0.998 1 225.558
 2115743 2115744 BALH_0071 BALH_0072 folB folK TRUE 0.999 -3 192.245
 2115744 2115745 BALH_0072 BALH_0073 folK TRUE 0.986 -48 4.328
 2115745 2115746 BALH_0073 BALH_0074 TRUE 0.895 3 3.493
 2115746 2115747 BALH_0074 BALH_0075 lysS TRUE 0.966 160 5.824
 2115747 2115748 BALH_0075 BALH_r16S03 lysS FALSE 0.006 373 0
 2115748 2115749 BALH_r16S03 BALH_r23S03 FALSE 0.022 259 0
 2115749 2115750 BALH_r23S03 BALH_r5S03 FALSE 0.14 101 0
 2115750 2115751 BALH_r5S03 BALH_tVal07 FALSE 0.404 6 0
 2115751 2115752 BALH_tVal07 BALH_tThr02 TRUE 0.51 2 0
 2115752 2115753 BALH_tThr02 BALH_tLys02 FALSE 0.333 11 0
 2115753 2115754 BALH_tLys02 BALH_tLeu08 FALSE 0.315 13 0
 2115754 2115755 BALH_tLeu08 BALH_tGly03 FALSE 0.312 27 0
 2115755 2115756 BALH_tGly03 BALH_tLeu04 FALSE 0.313 14 0
 2115756 2115757 BALH_tLeu04 BALH_tArg03 TRUE 0.538 1 0
 2115757 2115758 BALH_tArg03 BALH_tPro01 FALSE 0.404 6 0
 2115758 2115759 BALH_tPro01 BALH_tAla01 FALSE 0.382 7 0
 2115759 2115760 BALH_tAla01 BALH_r16S04 FALSE 0.172 76 0
 2115760 2115761 BALH_r16S04 BALH_r23S04 FALSE 0.022 259 0
 2115761 2115762 BALH_r23S04 BALH_r5S04 FALSE 0.25 46 0
 2115762 2115763 BALH_r5S04 BALH_0078 ctsR FALSE 0.045 204 0
 2115763 2115764 BALH_0078 BALH_0079 ctsR TRUE 0.906 162 59.151
 2115764 2115765 BALH_0079 BALH_0080 karG TRUE 0.999 -37 80.062
 2115765 2115766 BALH_0080 BALH_0081 karG clpC TRUE 0.987 23 61.314
 2115766 2115767 BALH_0081 BALH_0082 clpC radA TRUE 0.968 97 40.322
 2115767 2115768 BALH_0082 BALH_0083 radA TRUE 0.986 4 124.444
 2115768 2115769 BALH_0083 BALH_0084 TRUE 0.854 161 16.351
 2115769 2115770 BALH_0084 BALH_0085 ispD TRUE 0.976 17 33.9
 2115770 2115771 BALH_0085 BALH_0086 ispD ispF TRUE 0.992 115 671.418
 2115771 2115772 BALH_0086 BALH_0087 ispF gltX TRUE 0.962 57 -12.552
 2115772 2115773 BALH_0087 BALH_0088 gltX cysE FALSE 0.111 431 25.168
 2115773 2115774 BALH_0088 BALH_0089 cysE cysS TRUE 0.999 -19 124.787
 2115774 2115775 BALH_0089 BALH_0090 cysS TRUE 0.998 -15 136.488
 2115775 2115776 BALH_0090 BALH_0091 TRUE 0.998 -3 93.247
 2115776 2115777 BALH_0091 BALH_0092 TRUE 0.99 4 113.501
 2115777 2115778 BALH_0092 BALH_0093 sigH TRUE 0.952 68 41.55
 2115778 2115779 BALH_0093 BALH_0094 sigH nusG FALSE 0.089 622 9.594
 2115779 2115780 BALH_0094 BALH_0095 nusG rplK TRUE 0.954 159 1131.706
 2115780 2115781 BALH_0095 BALH_0096 rplK rplA TRUE 0.991 91 1439.816
 2115781 2115782 BALH_0096 BALH_0097 rplA rplJ TRUE 0.98 155 1018.241
 2115782 2115783 BALH_0097 BALH_0098 rplJ rplL TRUE 0.993 68 1369.252
 2115783 2115784 BALH_0098 BALH_0099 rplL TRUE 0.983 35 11.347
 2115784 2115785 BALH_0099 BALH_0100 rpoB FALSE 0.234 285 8.388
 2115785 2115786 BALH_0100 BALH_0101 rpoB rpoC TRUE 0.996 38 263.925
 2115786 2115787 BALH_0101 BALH_0102 rpoC TRUE 0.957 81 26.65
 2115787 2115788 BALH_0102 BALH_0103 rpsL TRUE 0.976 94 32.785
 2115788 2115789 BALH_0103 BALH_0104 rpsL rpsG TRUE 0.997 30 1432.501
 2115789 2115790 BALH_0104 BALH_0105 rpsG fusA TRUE 0.965 187 1251.804
 2115790 2115791 BALH_0105 BALH_0106 fusA tuf TRUE 0.991 118 576.28
 2115791 2115792 BALH_0106 BALH_0107 tuf rpsJ TRUE 0.669 399 481.901
 2115792 2115793 BALH_0107 BALH_0108 rpsJ rplC TRUE 0.996 35 1225.338
 2115793 2115794 BALH_0108 BALH_0109 rplC rplD TRUE 0.997 26 1351.36
 2115794 2115795 BALH_0109 BALH_0110 rplD rplW TRUE 0.999 0 1395.107
 2115795 2115796 BALH_0110 BALH_0111 rplW rplB TRUE 0.996 29 1367.188
 2115796 2115797 BALH_0111 BALH_0112 rplB rpsS TRUE 0.994 61 1405.544
 2115797 2115798 BALH_0112 BALH_0113 rpsS rplV TRUE 0.999 0 1272.377
 2115798 2115799 BALH_0113 BALH_0114 rplV rpsC TRUE 0.998 4 1261.201
 2115799 2115800 BALH_0114 BALH_0115 rpsC rplP TRUE 1 -52 1381.069
 2115800 2115801 BALH_0115 BALH_0116 rplP rpmC TRUE 1 -34 1172.429
 2115801 2115802 BALH_0116 BALH_0117 rpmC rpsQ TRUE 0.997 21 1157.962
 2115802 2115803 BALH_0117 BALH_0118 rpsQ rplN TRUE 0.995 44 1282.38
 2115803 2115804 BALH_0118 BALH_0119 rplN rplX TRUE 0.997 15 1405.045
 2115804 2115805 BALH_0119 BALH_0120 rplX rplE TRUE 0.997 27 1409.459
 2115805 2115806 BALH_0120 BALH_0121 rplE rpsN TRUE 0.995 34 420.273
 2115806 2115807 BALH_0121 BALH_0122 rpsN rpsH TRUE 0.999 -6 416.474
 2115807 2115808 BALH_0122 BALH_0123 rpsH rplF TRUE 0.996 33 1576.52
 2115808 2115809 BALH_0123 BALH_0124 rplF rplR TRUE 0.997 23 1531.943
 2115809 2115810 BALH_0124 BALH_0125 rplR rpsE TRUE 0.996 19 1333.769
 2115810 2115811 BALH_0125 BALH_0126 rpsE rpmD TRUE 0.997 14 1135.705
 2115811 2115812 BALH_0126 BALH_0127 rpmD rplO TRUE 0.997 34 1243.174
 2115812 2115813 BALH_0127 BALH_0128 rplO secY TRUE 0.997 0 1185.16
 2115813 2115814 BALH_0128 BALH_0129 secY adk TRUE 0.984 57 517.639
 2115814 2115815 BALH_0129 BALH_0130 adk map TRUE 0.994 0 178.878
 2115815 2115816 BALH_0130 BALH_0131 map infA TRUE 0.983 69 164.056
 2115816 2115817 BALH_0131 BALH_0132 infA rpsM TRUE 0.97 171 613.224
 2115817 2115818 BALH_0132 BALH_0133 rpsM rpsK TRUE 0.997 25 1519.139
 2115818 2115819 BALH_0133 BALH_0134 rpsK rpoA TRUE 0.931 181 1470.441
 2115819 2115820 BALH_0134 BALH_0135 rpoA rplQ TRUE 0.99 36 1344.077
 2115820 2115821 BALH_0135 BALH_0136 rplQ cbiO TRUE 0.951 44 55.287
 2115821 2115822 BALH_0136 BALH_0137 cbiO cbiO TRUE 1 -24 164.866
 2115822 2115823 BALH_0137 BALH_0138 cbiO cbiQ TRUE 0.999 -12 197.418
 2115823 2115824 BALH_0138 BALH_0140 cbiQ truA TRUE 0.999 -36 45.591
 2115824 2115825 BALH_0140 BALH_0141 truA rplM TRUE 0.971 153 80.41
 2115825 2115826 BALH_0141 BALH_0142 rplM rpsI TRUE 0.997 22 1469.661
 2115826 2115827 BALH_0142 BALH_0143 rpsI cwlD FALSE 0.047 658 5.93
 2115827 2115828 BALH_0143 BALH_0144 cwlD TRUE 0.559 112 5.34
 2115832 2115833 BALH_0148 BALH_r16S05 FALSE 0.034 224 0
 2115833 2115834 BALH_r16S05 BALH_r23S05 FALSE 0.022 259 0
 2115834 2115835 BALH_r23S05 BALH_r5S05 FALSE 0.159 86 0
 2115835 2115836 BALH_r5S05 BALH_tAsn02 FALSE 0.343 10 0
 2115836 2115837 BALH_tAsn02 BALH_tThr05 TRUE 0.51 2 0
 2115837 2115838 BALH_tThr05 BALH_tGlu01 FALSE 0.315 22 0
 2115838 2115839 BALH_tGlu01 BALH_tVal04 FALSE 0.485 3 0
 2115839 2115840 BALH_tVal04 BALH_tTyr03 FALSE 0.313 15 0
 2115840 2115841 BALH_tTyr03 BALH_tGln02 FALSE 0.2 63 0
 2115841 2115842 BALH_tGln02 BALH_tLys03 FALSE 0.485 3 0
 2115842 2115843 BALH_tLys03 BALH_tGly01 FALSE 0.485 3 0
 2115843 2115844 BALH_tGly01 BALH_tAla02 FALSE 0.361 8 0
 2115844 2115845 BALH_tAla02 BALH_0150 garK FALSE 0.14 101 0
 2115845 2115846 BALH_0150 BALH_0151 garK rocF FALSE 0.065 211 -12.809
 2115846 2115847 BALH_0151 BALH_0152 rocF FALSE 0.12 250 1.561
 2115847 2115848 BALH_0152 BALH_0153 TRUE 0.999 -61 35.913
 2115848 2115849 BALH_0153 BALH_0154 glmM TRUE 0.995 -7 10.667
 2115849 2115850 BALH_0154 BALH_0155 glmM glmS FALSE 0.096 485 38.948
 2115850 2115851 BALH_0155 BALH_0156 glmS tnsA FALSE 0.138 103 0
 2115851 2115852 BALH_0156 BALH_0157 tnsA FALSE 0.024 252 0
 2115852 2115853 BALH_0157 BALH_0158 gntR FALSE 0.003 254 -24.261
 2115853 2115854 BALH_0158 BALH_0159 gntR gntK TRUE 0.992 -103 12.93
 2115854 2115855 BALH_0159 BALH_0161 gntK gntP TRUE 0.807 117 12.686
 2115855 2115856 BALH_0161 BALH_0162 gntP gntZ TRUE 0.562 265 -13.777
 2115856 2115857 BALH_0162 BALH_0163 gntZ FALSE 0.011 343 -6.055
 2115857 2115858 BALH_0163 BALH_0164 FALSE 0.099 119 -0.427
 2115859 2115860 BALH_0165 BALH_0166 TRUE