VIMSS Operon Predictions for Acinetobacter sp. ADP1

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 587519 587520 ACIAD0001 ACIAD0002 dnaA dnaN TRUE 0.723 236 925.921
 587520 587521 ACIAD0002 ACIAD0003 dnaN recF TRUE 0.999 16 861.033
 587521 587522 ACIAD0003 ACIAD0004 recF gyrB TRUE 0.996 53 346.219
 587526 587527 ACIAD0008 ACIAD0009 adeT FALSE 0.036 249 0
 587527 587528 ACIAD0009 ACIAD0010 adeT FALSE 0.07 119 -0.344
 587530 587531 ACIAD0013 ACIAD0014 tyrS FALSE 0.025 571 0
 587531 587532 ACIAD0014 ACIAD0015 FALSE 0.038 242 0
 587532 587533 ACIAD0015 ACIADrRNA16S_1 FALSE 0.026 534 0
 587533 587534 ACIADrRNA16S_1 ACIADtRNAIle_1 TRUE 0.516 62 0
 587534 587535 ACIADtRNAIle_1 ACIADtRNAAla_2 TRUE 0.779 37 0
 587535 587536 ACIADtRNAAla_2 ACIADrRNA23S_2 FALSE 0.03 344 0
 587536 587537 ACIADrRNA23S_2 ACIADrRNA5S_3 FALSE 0.047 186 0
 587537 587538 ACIADrRNA5S_3 ACIAD0017 FALSE 0.05 178 0
 587538 587539 ACIAD0017 ACIAD0018 TRUE 0.61 54 0
 587540 587541 ACIAD0019 ACIAD0020 fkpB FALSE 0.108 99 -3.043
 587541 587542 ACIAD0020 ACIAD0021 fkpB lspA TRUE 0.976 -7 196.959
 587542 587543 ACIAD0021 ACIAD0022 lspA ileS TRUE 0.995 -7 620.493
 587543 587544 ACIAD0022 ACIAD0023 ileS ribF TRUE 0.926 65 445.739
 587545 587546 ACIAD0024 ACIAD0025 TRUE 0.588 45 -2.007
 587548 587549 ACIAD0027 ACIAD0028 TRUE 0.842 -3 55.116
 587549 587550 ACIAD0028 ACIAD0029 TRUE 0.977 13 54.665
 587550 587551 ACIAD0029 ACIAD0030 FALSE 0.174 79 -0.396
 587551 587552 ACIAD0030 ACIAD0031 TRUE 0.909 30 2.987
 587552 587553 ACIAD0031 ACIAD0032 TRUE 0.925 16 -1.164
 587554 587555 ACIAD0034 ACIAD0035 ssuB ssuC TRUE 0.955 4 234.785
 587555 587556 ACIAD0035 ACIAD0036 ssuC ssuD TRUE 0.947 -3 233.037
 587556 587557 ACIAD0036 ACIAD0037 ssuD ssuA TRUE 0.978 23 77.075
 587557 587558 ACIAD0037 ACIAD0038 ssuA ssuA TRUE 0.997 27 10.234
 587558 587559 ACIAD0038 ACIAD0039 ssuA argA FALSE 0.007 373 -5.772
 587559 587560 ACIAD0039 ACIAD0040 argA FALSE 0.12 112 0
 587560 587561 ACIAD0040 ACIAD0041 FALSE 0.051 176 0
 587561 587562 ACIAD0041 ACIAD0042 FALSE 0.024 270 -0.172
 587562 587563 ACIAD0042 ACIAD0043 TRUE 0.971 31 30.426
 587563 587564 ACIAD0043 ACIAD0044 ubiG TRUE 0.942 -3 209.26
 587566 587567 ACIAD0046 ACIAD0047 TRUE 0.553 94 0
 587568 587569 ACIAD0048 ACIAD0049 TRUE 0.919 35 1.118
 587569 587570 ACIAD0049 ACIAD0050 rph FALSE 0.291 68 -0.709
 587570 587571 ACIAD0050 ACIAD0051 rph FALSE 0.028 224 -0.236
 587571 587572 ACIAD0051 ACIAD0052 TRUE 0.906 -7 0
 587572 587573 ACIAD0052 ACIAD0053 FALSE 0.343 2 0
 587573 587574 ACIAD0053 ACIAD0054 FALSE 0.294 1 0
 587574 587575 ACIAD0054 ACIAD0055 FALSE 0.034 276 0
 587575 587576 ACIAD0055 ACIAD0056 TRUE 0.58 57 0
 587576 587577 ACIAD0056 ACIAD0057 FALSE 0.215 90 0
 587577 587578 ACIAD0057 ACIAD0058 FALSE 0.363 74 0
 587578 587579 ACIAD0058 ACIAD0059 TRUE 0.975 -18 0
 587579 587580 ACIAD0059 ACIAD0060 FALSE 0.032 308 0
 587580 587581 ACIAD0060 ACIAD0061 TRUE 0.896 10 0
 587583 587584 ACIAD0063 ACIAD0064 ampD FALSE 0.367 53 -26.337
 587585 587586 ACIAD0065 ACIAD0066 fklB fkpA TRUE 0.967 46 -6.534
 587586 587587 ACIAD0066 ACIAD0068 fkpA ptk FALSE 0.026 170 -8.122
 587587 587588 ACIAD0068 ACIAD0069 ptk ptp TRUE 0.993 15 107.876
 587588 587589 ACIAD0069 ACIAD0070 ptp wza TRUE 0.92 -3 85.406
 587590 587591 ACIAD0072 ACIAD0073 ugd TRUE 0.924 19 -0.422
 587591 587592 ACIAD0073 ACIAD0074 TRUE 0.947 -10 0
 587592 587593 ACIAD0074 ACIAD0075 TRUE 0.891 -3 0.097
 587593 587594 ACIAD0075 ACIAD0076 rmlB TRUE 0.926 30 -10.232
 587594 587595 ACIAD0076 ACIAD0078 rmlB rmlD TRUE 1 19 502.224
 587595 587596 ACIAD0078 ACIAD0079 rmlD rmlA TRUE 0.992 1 447.079
 587596 587597 ACIAD0079 ACIAD0080 rmlA rmlC TRUE 0.977 71 600.306
 587597 587598 ACIAD0080 ACIAD0081 rmlC TRUE 0.982 14 -0.637
 587598 587599 ACIAD0081 ACIAD0082 TRUE 0.896 -10 -0.329
 587599 587600 ACIAD0082 ACIAD0083 TRUE 0.968 20 3.952
 587600 587601 ACIAD0083 ACIAD0084 TRUE 0.913 20 -0.078
 587601 587602 ACIAD0084 ACIAD0085 TRUE 0.911 13 -0.875
 587604 587605 ACIAD0087 ACIAD0088 TRUE 0.995 30 139.991
 587605 587606 ACIAD0088 ACIAD0089 TRUE 0.677 0 5.143
 587606 587607 ACIAD0089 ACIAD0090 TRUE 0.848 -3 3.328
 587607 587608 ACIAD0090 ACIAD0091 TRUE 0.999 13 15.323
 587608 587609 ACIAD0091 ACIAD0092 TRUE 0.995 9 27.526
 587609 587610 ACIAD0092 ACIAD0093 TRUE 0.995 -6 129.76
 587610 587611 ACIAD0093 ACIAD0094 TRUE 0.998 -19 100.713
 587611 587612 ACIAD0094 ACIAD0095 per TRUE 0.85 4 33.423
 587612 587613 ACIAD0095 ACIAD0096 per TRUE 0.911 2 39.125
 587613 587614 ACIAD0096 ACIAD0098 FALSE 0.073 414 -8.058
 587614 587615 ACIAD0098 ACIAD0099 galU TRUE 0.523 80 -12.715
 587615 587616 ACIAD0099 ACIAD0100 galU TRUE 0.978 27 -1.158
 587616 587617 ACIAD0100 ACIAD0101 pgi TRUE 0.537 -3 -4.545
 587617 587618 ACIAD0101 ACIAD0102 pgi galE TRUE 0.884 -7 -22.962
 587618 587619 ACIAD0102 ACIAD0103 galE TRUE 0.907 37 -3.48
 587620 587621 ACIAD0104 ACIAD0105 manB FALSE 0.036 143 -0.5
 587622 587623 ACIAD0106 ACIAD0107 lldP lldR TRUE 0.99 24 111.935
 587623 587624 ACIAD0107 ACIAD0108 lldR lldD TRUE 0.913 -3 61.574
 587624 587625 ACIAD0108 ACIAD0109 lldD dld TRUE 0.74 4 -0.946
 587625 587626 ACIAD0109 ACIAD0110 dld FALSE 0.053 128 -0.42
 587627 587628 ACIAD0111 ACIAD0112 tyrB FALSE 0.061 154 0
 587628 587629 ACIAD0112 ACIAD0114 tyrB lrp FALSE 0.013 706 -22.017
 587630 587631 ACIAD0115 ACIAD0116 dadA dadX TRUE 0.941 32 83.829
 587631 587632 ACIAD0116 ACIAD0117 dadX TRUE 0.782 12 -10.636
 587632 587633 ACIAD0117 ACIAD0118 cycA FALSE 0.017 254 -3.115
 587633 587634 ACIAD0118 ACIAD0119 cycA FALSE 0.013 527 -2.532
 587634 587635 ACIAD0119 ACIAD0120 TRUE 0.525 115 53.374
 587635 587636 ACIAD0120 ACIAD0121 TRUE 0.994 13 52.028
 587636 587637 ACIAD0121 ACIAD0122 TRUE 0.534 1 39.769
 587637 587638 ACIAD0122 ACIAD0123 TRUE 0.853 -3 34.024
 587638 587639 ACIAD0123 ACIAD0124 FALSE 0.051 155 0
 587640 587641 ACIAD0125 ACIAD0126 garD TRUE 0.52 52 -10.177
 587641 587642 ACIAD0126 ACIAD0127 garD gudP TRUE 0.894 69 19.176
 587643 587644 ACIAD0128 ACIAD0130 gudD kdgD FALSE 0.19 711 6.989
 587644 587645 ACIAD0130 ACIAD0131 kdgD TRUE 0.96 33 31.19
 587645 587646 ACIAD0131 ACIAD0132 FALSE 0.101 216 8.708
 587648 587649 ACIAD0134 ACIAD0135 FALSE 0.062 152 0
 587649 587650 ACIAD0135 ACIAD0136 FALSE 0.072 239 5.821
 587650 587651 ACIAD0136 ACIAD0137 TRUE 0.989 11 10.581
 587651 587652 ACIAD0137 ACIAD0138 TRUE 0.843 -3 12.427
 587652 587653 ACIAD0138 ACIAD0139 FALSE 0.477 65 0
 587654 587655 ACIADtRNAGly_3 ACIADtRNAGly_4 TRUE 0.724 42 0
 587656 587657 ACIAD0141 ACIAD0142 TRUE 0.95 13 0
 587657 587658 ACIAD0142 ACIAD0143 TRUE 0.954 12 1.96
 587658 587659 ACIAD0143 ACIAD0144 FALSE 0.281 82 0
 587659 587660 ACIAD0144 ACIAD0145 TRUE 0.906 -7 0
 587660 587661 ACIAD0145 ACIAD0147 FALSE 0.042 210 0
 587663 587664 ACIAD0149 ACIAD0150 FALSE 0.082 113 -0.333
 587664 587665 ACIAD0150 ACIAD0151 guaA TRUE 0.507 54 -0.748
 587667 587668 ACIAD0154 ACIAD0155 TRUE 0.888 34 9.798
 587668 587669 ACIAD0155 ACIAD0156 TRUE 0.945 16 -0.095
 587669 587670 ACIAD0156 ACIAD0157 FALSE 0.04 151 -1.893
 587670 587671 ACIAD0157 ACIAD0158 TRUE 0.891 -3 28.344
 587671 587672 ACIAD0158 ACIAD0159 TRUE 0.706 66 -3.571
 587674 587675 ACIAD0161 ACIAD0162 FALSE 0.24 76 -2.255
 587676 587677 ACIAD0163 ACIAD0164 argS FALSE 0.326 116 44.12
 587677 587678 ACIAD0164 ACIAD0165 argS FALSE 0.061 153 0
 587679 587680 ACIAD0166 ACIAD0167 sfcA FALSE 0.069 136 0
 587680 587681 ACIAD0167 ACIAD0168 TRUE 0.69 -3 0
 587681 587682 ACIAD0168 ACIAD0169 FALSE 0.343 2 0
 587682 587683 ACIAD0169 ACIAD0171 FALSE 0.039 230 0
 587686 587687 ACIAD0174 ACIAD0175 znuB znuC TRUE 0.966 3 517.297
 587687 587688 ACIAD0175 ACIAD0176 znuC zur TRUE 0.995 -9 116.458
 587689 587690 ACIAD0177 ACIAD0178 znuA atpI FALSE 0.012 174 -1.036
 587690 587691 ACIAD0178 ACIAD0180 atpI atpB TRUE 0.883 104 72.821
 587691 587692 ACIAD0180 ACIAD0182 atpB atpE TRUE 0.99 85 892.372
 587692 587693 ACIAD0182 ACIAD0183 atpE atpF TRUE 0.999 40 946.562
 587693 587694 ACIAD0183 ACIAD0184 atpF atpH TRUE 1 12 1015.424
 587694 587695 ACIAD0184 ACIAD0185 atpH atpA TRUE 0.999 31 1313.044
 587695 587696 ACIAD0185 ACIAD0186 atpA atpG TRUE 0.994 78 1597.802
 587696 587697 ACIAD0186 ACIAD0187 atpG atpD TRUE 0.999 31 1374.459
 587697 587698 ACIAD0187 ACIAD0188 atpD atpC TRUE 1 28 1272.73
 587698 587699 ACIAD0188 ACIAD0189 atpC FALSE 0.041 144 -2.347
 587699 587700 ACIAD0189 ACIAD0190 FALSE 0.094 121 0
 587700 587701 ACIAD0190 ACIAD0191 TRUE 0.95 13 0
 587702 587703 ACIAD0192 ACIAD0193 FALSE 0.045 192 0
 587703 587704 ACIAD0193 ACIAD0194 FALSE 0.035 136 -1.801
 587704 587705 ACIAD0194 ACIAD0195 TRUE 0.899 19 -1.595
 587706 587707 ACIAD0196 ACIAD0197 FALSE 0.179 78 -7.95
 587707 587708 ACIAD0197 ACIAD0198 FALSE 0.017 418 -8.745
 587708 587709 ACIAD0198 ACIAD0199 TRUE 0.819 34 0
 587709 587710 ACIAD0199 ACIAD0200 TRUE 0.98 -7 2.12
 587710 587711 ACIAD0200 ACIAD0201 TRUE 0.69 -3 0
 587711 587712 ACIAD0201 ACIAD0202 FALSE 0.058 162 0
 587712 587713 ACIAD0202 ACIAD0203 FALSE 0.036 252 0
 587713 587714 ACIAD0203 ACIAD0204 FALSE 0.337 76 0
 587714 587715 ACIAD0204 ACIAD0205 TRUE 0.554 42 -3.075
 587715 587716 ACIAD0205 ACIAD0206 TRUE 0.995 25 528.713
 587716 587717 ACIAD0206 ACIAD0207 TRUE 0.999 13 534.087
 587718 587719 ACIAD0208 ACIAD0209 TRUE 0.942 34 36.452
 587719 587720 ACIAD0209 ACIAD0210 TRUE 0.996 18 189.808
 587721 587722 ACIAD0211 ACIAD0212 def TRUE 0.816 34 0
 587722 587723 ACIAD0212 ACIAD0214 FALSE 0.15 103 0
 587723 587724 ACIAD0214 ACIAD0215 TRUE 0.672 48 0
 587726 587727 ACIAD0217 ACIADrRNA16S_4 FALSE 0.026 480 0
 587727 587728 ACIADrRNA16S_4 ACIADtRNAIle_5 TRUE 0.516 62 0
 587728 587729 ACIADtRNAIle_5 ACIADtRNAAla_6 TRUE 0.779 37 0
 587729 587730 ACIADtRNAAla_6 ACIADrRNA23S_5 FALSE 0.03 344 0
 587730 587731 ACIADrRNA23S_5 ACIADrRNA5S_6 FALSE 0.047 186 0
 587731 587732 ACIADrRNA5S_6 ACIAD0219 FALSE 0.056 164 0
 587732 587733 ACIAD0219 ACIAD0220 FALSE 0.043 206 0
 587733 587734 ACIAD0220 ACIAD0221 FALSE 0.028 392 0
 587735 587736 ACIAD0222 ACIAD0223 shiA FALSE 0.179 1 -0.347
 587736 587737 ACIAD0223 ACIAD0224 shiA FALSE 0.294 1 0
 587737 587738 ACIAD0224 ACIAD0225 dinP FALSE 0.245 86 0
 587738 587739 ACIAD0225 ACIAD0226 dinP TRUE 0.516 -3 -4.343
 587739 587740 ACIAD0226 ACIAD0228 TRUE 0.623 42 -4.887
 587740 587741 ACIAD0228 ACIAD0229 FALSE 0.048 130 -1.821
 587742 587743 ACIAD0230 ACIAD0231 FALSE 0.47 56 -5.645
 587743 587744 ACIAD0231 ACIAD0232 TRUE 0.604 49 -7.882
 587744 587745 ACIAD0232 ACIAD0233 FALSE 0.028 232 -11.477
 587745 587746 ACIAD0233 ACIAD0234 parC FALSE 0.029 158 -6.93
 587746 587747 ACIAD0234 ACIAD0235 parC fadD FALSE 0.015 147 -27.375
 587749 587750 ACIAD0237 ACIAD0239 ppa FALSE 0.051 127 -10.14
 587753 587754 ACIAD0242 ACIAD0243 TRUE 0.606 70 13.76
 587755 587756 ACIAD0244 ACIAD0245 glnK amtB TRUE 0.958 62 478.11
 587756 587757 ACIAD0245 ACIAD0246 amtB FALSE 0.046 123 -27.882
 587757 587758 ACIAD0246 ACIAD0247 ribD TRUE 0.993 -7 413.721
 587758 587759 ACIAD0247 ACIAD0248 ribD TRUE 0.549 -3 -0.242
 587759 587760 ACIAD0248 ACIAD0249 ribC TRUE 0.547 45 -0.534
 587761 587762 ACIAD0250 ACIAD0251 FALSE 0.089 123