VIMSS Operon Predictions for Bacillus clausii KSM-K16

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 821419 821420 ABC0001 ABC0002 dnaA dnaN TRUE 0.982 170 988.498
 821420 821421 ABC0002 ABC0003 dnaN TRUE 0.837 165 85.669
 821421 821422 ABC0003 ABC0004 recF TRUE 0.986 3 88.738
 821422 821423 ABC0004 ABC0005 recF TRUE 0.959 4 41.11
 821423 821424 ABC0005 ABC0006 gyrB TRUE 0.981 26 36.355
 821424 821425 ABC0006 ABC0007 gyrB gyrA TRUE 0.999 49 255.484
 821425 821426 ABC0007 ABC0008 gyrA FALSE 0.013 359 -5.031
 821426 821427 ABC0008 ABC0009 FALSE 0.02 296 -3.826
 821427 821428 ABC0009 ABCr01 rrnA-16S FALSE 0.041 295 0
 821428 821429 ABCr01 ABCr02 rrnA-16S rrnA-23S FALSE 0.034 332 0
 821429 821430 ABCr02 ABCr03 rrnA-23S rrnA-5S FALSE 0.028 372 0
 821432 821433 ABC0011 ABC0012 guaB dacA FALSE 0.357 146 9.368
 821433 821434 ABC0012 ABC0013 dacA serS FALSE 0.085 139 -16.611
 821434 821435 ABC0013 ABC0014 serS mtnU TRUE 0.6 14 -35.184
 821435 821436 ABC0014 ABC0015 mtnU TRUE 0.907 24 -2.591
 821438 821439 ABC0017 ABC0018 rocD FALSE 0.012 383 -7.068
 821439 821440 ABC0018 ABC0019 FALSE 0.054 195 -0.431
 821440 821441 ABC0019 ABC0020 FALSE 0.043 220 -0.45
 821441 821442 ABC0020 ABC0021 TRUE 0.931 19 -1.059
 821442 821443 ABC0021 ABC0022 TRUE 0.698 3 1.014
 821443 821444 ABC0022 ABC0023 TRUE 0.576 9 0
 821444 821445 ABC0023 ABC0024 TRUE 0.978 14 26.87
 821447 821448 ABC0026 ABC0027 TRUE 0.997 43 396.333
 821448 821449 ABC0027 ABC0028 TRUE 0.999 -3 215.797
 821450 821451 ABC0029 ABC0030 TRUE 0.999 -31 95.449
 821451 821452 ABC0030 ABC0031 TRUE 0.989 19 11.092
 821452 821453 ABC0031 ABC0032 TRUE 0.996 23 32.284
 821454 821455 ABC0033 ABC0034 FALSE 0.014 367 -10.2
 821456 821457 ABC0035 ABC0036 TRUE 0.783 20 0
 821458 821459 ABC0037 ABC0038 dnaX TRUE 0.995 10 280.116
 821459 821460 ABC0038 ABC0039 recR TRUE 0.997 13 1082.504
 821460 821461 ABC0039 ABC0040 recR TRUE 0.912 13 24.033
 821461 821462 ABC0040 ABC0041 bofA TRUE 0.686 68 16.09
 821462 821463 ABC0041 ABCr04 bofA rrnB-16S FALSE 0.039 305 0
 821463 821464 ABCr04 ABCr05 rrnB-16S rrnB-23S FALSE 0.022 456 0
 821464 821465 ABCr05 ABCr06 rrnB-23S rrnB-5S FALSE 0.049 274 0
 821465 821466 ABCr06 ABC0042 rrnB-5S FALSE 0.02 502 0
 821466 821467 ABC0042 ABC0043 TRUE 0.838 14 0.979
 821467 821468 ABC0043 ABC0044 TRUE 0.894 18 0.979
 821468 821469 ABC0044 ABC0045 TRUE 0.993 -3 22.131
 821469 821470 ABC0045 ABC0046 adhA FALSE 0.04 215 -2.708
 821470 821471 ABC0046 ABC0047 adhA dhaS TRUE 0.68 16 -16.071
 821471 821472 ABC0047 ABC0048 dhaS FALSE 0.016 336 -1.897
 821472 821473 ABC0048 ABC0049 FALSE 0.011 455 -1.897
 821473 821474 ABC0049 ABC0050 tmk TRUE 0.882 3 40.446
 821474 821475 ABC0050 ABC0051 tmk TRUE 0.995 22 75.005
 821475 821476 ABC0051 ABC0052 holB TRUE 0.957 7 41.978
 821476 821477 ABC0052 ABC0053 holB TRUE 0.988 4 104.855
 821477 821478 ABC0053 ABC0054 TRUE 0.979 5 73.753
 821478 821479 ABC0054 ABC0055 TRUE 0.854 95 38.507
 821479 821480 ABC0055 ABC0056 TRUE 0.991 -3 111.095
 821480 821481 ABC0056 ABC0057 TRUE 0.988 -3 31.264
 821483 821484 ABC0059 ABC0060 TRUE 0.953 16 2.702
 821484 821485 ABC0060 ABC0061 metS FALSE 0.005 315 0.505
 821487 821488 ABC0063 ABC0064 pelB FALSE 0.014 365 -2.429
 821490 821491 ABC0066 ABC0067 FALSE 0.104 180 0
 821491 821492 ABC0067 ABC0068 TRUE 0.968 26 16.17
 821492 821493 ABC0068 ABC0069 rnmV TRUE 0.99 -7 15.068
 821493 821494 ABC0069 ABC0070 rnmV ksgA TRUE 0.999 -13 135.493
 821494 821495 ABC0070 ABC0071 ksgA TRUE 0.959 55 18.23
 821495 821496 ABC0071 ABC0072 veg FALSE 0.359 298 31.813
 821496 821497 ABC0072 ABC0073 veg sspF FALSE 0.452 118 13.57
 821497 821498 ABC0073 ABC0074 sspF ispE FALSE 0.306 179 13.796
 821498 821499 ABC0074 ABC0075 ispE purR TRUE 0.98 32 45.295
 821499 821500 ABC0075 ABC0076 purR TRUE 0.938 14 25.977
 821500 821501 ABC0076 ABC0077 spoVG FALSE 0.46 155 28.34
 821501 821502 ABC0077 ABC0078 spoVG gcaD FALSE 0.293 325 68.408
 821502 821503 ABC0078 ABC0079 gcaD prs TRUE 0.994 26 205.989
 821503 821504 ABC0079 ABC0080 prs ctc TRUE 0.967 120 551.917
 821504 821505 ABC0080 ABC0081 ctc pth TRUE 0.998 58 794.525
 821505 821506 ABC0081 ABC0082 pth FALSE 0.405 154 18.242
 821506 821507 ABC0082 ABC0083 mfd FALSE 0.188 272 18.242
 821507 821508 ABC0083 ABC0084 mfd spoVT TRUE 0.88 175 22.137
 821508 821509 ABC0084 ABC0085 spoVT FALSE 0.376 41 -2.971
 821510 821511 ABC0086 ABC0087 murG TRUE 0.619 34 0
 821512 821513 ABC0088 ABC0089 TRUE 0.932 14 24.841
 821513 821514 ABC0089 ABC0090 TRUE 0.998 -28 51.122
 821514 821515 ABC0090 ABC0091 TRUE 0.574 0 -24.312
 821517 821518 ABC0093 ABC0094 FALSE 0.155 82 -9.271
 821518 821519 ABC0094 ABC0095 FALSE 0.254 88 0
 821519 821520 ABC0095 ABC0096 FALSE 0.158 135 0
 821520 821521 ABC0096 ABC0097 TRUE 0.866 0 5.762
 821521 821522 ABC0097 ABC0098 divIC TRUE 0.921 -3 5.762
 821522 821523 ABC0098 ABC0099 divIC TRUE 0.898 78 47.275
 821523 821524 ABC0099 ABCt01 trnA-Met FALSE 0.092 195 0
 821524 821525 ABCt01 ABC0100 trnA-Met FALSE 0.076 220 0
 821525 821526 ABC0100 ABC0101 spoIIE FALSE 0.014 340 -1.897
 821526 821527 ABC0101 ABC0102 spoIIE TRUE 0.641 63 6.639
 821527 821528 ABC0102 ABC0103 TRUE 0.993 -73 7.852
 821528 821529 ABC0103 ABC0104 TRUE 0.945 24 5.576
 821529 821530 ABC0104 ABC0105 hprT TRUE 0.986 43 153.655
 821530 821531 ABC0105 ABC0106 hprT ftsH TRUE 0.968 70 174.322
 821531 821532 ABC0106 ABC0107 ftsH TRUE 0.956 60 13.111
 821532 821533 ABC0107 ABC0108 hslO TRUE 0.957 17 18.225
 821533 821534 ABC0108 ABC0109 hslO cysK FALSE 0.494 134 12.636
 821534 821535 ABC0109 ABC0110 cysK pabB TRUE 0.577 171 0.545
 821535 821536 ABC0110 ABC0111 pabB pabA TRUE 0.999 13 301.226
 821536 821537 ABC0111 ABC0112 pabA pabC TRUE 0.999 -15 16.308
 821537 821538 ABC0112 ABC0113 pabC sul TRUE 0.993 -3 15.359
 821538 821539 ABC0113 ABC0114 sul folA TRUE 0.999 -7 268.248
 821539 821540 ABC0114 ABC0115 folA folK TRUE 0.999 -7 322.226
 821540 821541 ABC0115 ABC0116 folK TRUE 0.502 121 -3.488
 821541 821542 ABC0116 ABC0117 lysS TRUE 0.978 82 24.209
 821542 821543 ABC0117 ABCr07 lysS rrnC-16S FALSE 0.033 335 0
 821543 821544 ABCr07 ABCr08 rrnC-16S rrnC-23S FALSE 0.023 455 0
 821544 821545 ABCr08 ABCr09 rrnC-23S rrnC-5S FALSE 0.021 485 0
 821545 821546 ABCr09 ABCt02 rrnC-5S trnB-Val TRUE 0.81 18 0
 821546 821547 ABCt02 ABCt03 trnB-Val trnB-Thr FALSE 0.158 135 0
 821547 821548 ABCt03 ABCt04 trnB-Thr trnB-Lys TRUE 0.805 19 0
 821548 821549 ABCt04 ABCt05 trnB-Lys trnB-Leu1 TRUE 0.666 13 0
 821549 821550 ABCt05 ABCt06 trnB-Leu1 trnB-Gly TRUE 0.796 20 0
 821550 821551 ABCt06 ABCt07 trnB-Gly trnB-Leu2 TRUE 0.796 20 0
 821551 821552 ABCt07 ABCt08 trnB-Leu2 trnB-Arg TRUE 0.796 20 0
 821552 821553 ABCt08 ABCt09 trnB-Arg trnB-Pro TRUE 0.518 5 0
 821553 25363 ABCt09 ABCt10 trnB-Pro trnB-Ala TRUE 0.57 8 0
 25363 821555 ABCt10 ABCr10 trnB-Ala rrnD-16S FALSE 0.108 176 0
 821555 821556 ABCr10 ABCr11 rrnD-16S rrnD-23S FALSE 0.034 332 0
 821556 821557 ABCr11 ABCr12 rrnD-23S rrnD-5S FALSE 0.021 493 0
 821557 821558 ABCr12 ABC0118 rrnD-5S ctsR FALSE 0.015 873 0
 821558 821559 ABC0118 ABC0119 ctsR mcsA TRUE 0.995 16 78.662
 821559 821560 ABC0119 ABC0120 mcsA mcsB TRUE 0.988 6 101.664
 821560 821561 ABC0120 ABC0121 mcsB clpC TRUE 0.995 21 79.076
 821561 821562 ABC0121 ABC0122 clpC sms TRUE 0.932 162 68.515
 821562 821563 ABC0122 ABC0123 sms TRUE 0.976 6 149.896
 821563 821564 ABC0123 ABC0124 TRUE 0.801 152 29.786
 821564 821565 ABC0124 ABC0125 ispD TRUE 0.802 207 55.169
 821565 821566 ABC0125 ABC0126 ispD ispF TRUE 1 -3 769.684
 821566 821567 ABC0126 ABC0127 ispF gltX TRUE 0.938 67 9.881
 821567 821568 ABC0127 ABC0128 gltX cysE FALSE 0.263 289 48.122
 821568 821569 ABC0128 ABC0129 cysE cysS TRUE 0.985 51 147.751
 821569 821570 ABC0129 ABC0130 cysS TRUE 0.999 -18 154.645
 821570 821571 ABC0130 ABC0131 TRUE 0.999 -3 114.116
 821571 821572 ABC0131 ABC0132 TRUE 0.986 8 132.817
 821572 821573 ABC0132 ABC0133 sigH TRUE 0.909 88 52.963
 821573 821574 ABC0133 ABC0134 sigH rpmG FALSE 0.448 119 14.128
 821574 821575 ABC0134 ABC0135 rpmG secE TRUE 0.896 74 35.114
 821575 821576 ABC0135 ABC0136 secE nusG TRUE 0.988 57 257.942
 821576 821577 ABC0136 ABC0137 nusG rplK TRUE 0.965 156 1289.016
 821577 821578 ABC0137 ABC0138 rplK rplA TRUE 0.996 96 1642.591
 821578 821579 ABC0138 ABC0139 rplA rplJ TRUE 0.985 217 1209.295
 821579 821580 ABC0139 ABC0140 rplJ rplL TRUE 0.999 55 1590.275
 821580 821581 ABC0140 ABC0141 rplL TRUE 0.988 31 29.883
 821581 821582 ABC0141 ABC0142 rpoB FALSE 0.229 319 25.393
 821582 821583 ABC0142 ABC0143 rpoB rpoC TRUE 0.967 294 278.3
 821583 821584 ABC0143 ABC0144 rpoC TRUE 0.918 101 57.489
 821584 821585 ABC0144 ABC0145 rpsL TRUE 0.965 100 58.411
 821585 821586 ABC0145 ABC0146 rpsL rpsG TRUE 0.999 44 1555.266
 821586 821587 ABC0146 ABC0147 rpsG fus TRUE 0.998 39 1361.128
 821587 821588 ABC0147 ABC0148 fus tufA TRUE 0.996 122 650.766
 821588 821589 ABC0148 ABC0149 tufA rpsJ TRUE 0.938 291 570.352
 821589 821590 ABC0149 ABC0150 rpsJ rplC TRUE 0.999 38 1332.573
 821590 821591 ABC0150 ABC0151 rplC rplD TRUE 1 25 1483.3
 821591 821592 ABC0151 ABC0152 rplD rplW TRUE 0.999 0 1527.643
 821592 821593 ABC0152 ABC0153 rplW rplB TRUE 0.999 29 1508.715
 821593 821594 ABC0153 ABC0154 rplB rpsS TRUE 0.998 61 1540.254
 821594 821595 ABC0154 ABC0155 rpsS rplV TRUE 1 24 1418.044
 821595 821596 ABC0155 ABC0156 rplV rpsC TRUE 0.999 4 1416.032
 821596 821597 ABC0156 ABC0157 rpsC rplP TRUE 0.999 3 1508.849
 821597 821598 ABC0157 ABC0158 rplP rpmC TRUE 1 -13 1407.324
 821598 821599 ABC0158 ABC0159 rpmC rpsQ TRUE 1 16 1385.575
 821599 821600 ABC0159 ABC0160 rpsQ rplN TRUE 0.999 32 1397.491
 821600 821601 ABC0160 ABC0161 rplN rplX TRUE 0.999 41 1524.03
 821601 821602 ABC0161 ABC0162 rplX rplE TRUE 1 28 1538.243
 821602 821603 ABC0162 ABC0163 rplE rpsN TRUE 0.999 25 457.414
 821603 821604 ABC0163 ABC0164 rpsN rpsH TRUE 0.999 27 453.813
 821604 821605 ABC0164 ABC0165 rpsH rplF TRUE 1 31 1744.227
 821605 821606 ABC0165 ABC0166 rplF rplR TRUE 1 31 1678.805
 821606 821607 ABC0166 ABC0167 rplR rpsE TRUE 1 25 1456.85
 821607 821608 ABC0167 ABC0168 rpsE rpmD TRUE 1 14 1218.324
 821608 821609 ABC0168 ABC0169 rpmD rplO TRUE 0.999 37 1332.039
 821609 821610 ABC0169 ABC0170 rplO secY TRUE 0.998 0 1588.174
 821610 821611 ABC0170 ABC0171 secY adk TRUE 0.989 67 717.405
 821611 821612 ABC0171 ABC0172 adk map TRUE 0.996 -3 222.121
 821612 821613 ABC0172 ABC0173 map infA TRUE 0.981 85 192.791
 821613 821614 ABC0173 ABC0174 infA rpmJ TRUE 0.995 33 509.743
 821614 821615 ABC0174 ABC0175 rpmJ rpsM TRUE 0.999 23 890.338
 821615 821616 ABC0175 ABC0176 rpsM rpsK TRUE 1 13 1666.145
 821616 821617 ABC0176 ABC0177 rpsK rpoA TRUE 0.955 174 1614.934
 821617 821618 ABC0177 ABC0178 rpoA rplQ TRUE 0.997 35 1458.421
 821618 821619 ABC0178 ABC0179 rplQ TRUE 0.971 48 73.763
 821619 821620 ABC0179 ABC0180 TRUE 1 -24 178.138
 821620 821621 ABC0180 ABC0181 TRUE 0.999 -3 206.878
 821621 821622 ABC0181 ABC0182 truA TRUE 0.996 21 82.777
 821622 821623 ABC0182 ABC0183 truA rplM TRUE 0.96 180 170.771
 821623 821624 ABC0183 ABC0184 rplM rpsI TRUE 1 20 1600.955
 821624 821625 ABC0184 ABC0185 rpsI FALSE 0.147 144 0