VIMSS Operon Predictions for Azoarcus sp. EbN1

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 813575 813576 ebA2 ebA5 FALSE 0.034 396 0
 813578 813579 ebA7 ebA8 FALSE 0.12 155 0
 813579 813580 ebA8 ebB1 FALSE 0.047 296 0
 813580 813581 ebB1 ebA11 TRUE 0.858 38 6.602
 813581 813582 ebA11 ebA15 FALSE 0.033 406 0
 813582 813583 ebA15 ebA22 FALSE 0.026 746 0
 813583 813584 ebA22 ebA23 TRUE 0.743 32 0
 813589 813590 ebA31 ebA33 TRUE 0.817 -3 -0.197
 813590 813591 ebA33 ebA35 TRUE 0.622 57 0.659
 813591 813592 ebA35 ebA36 FALSE 0.219 54 -1.583
 813592 813593 ebA36 ebA37 TRUE 0.781 3 11.155
 813593 813594 ebA37 ebA38 TRUE 0.998 -7 60.548
 813594 813595 ebA38 ebA40 sthA TRUE 0.995 -10 35.007
 813595 813596 ebA40 ebA41 sthA FALSE 0.259 82 0
 813596 813597 ebA41 ebA43 lipP FALSE 0.475 50 0
 813597 813598 ebA43 ebA45 lipP FALSE 0.214 105 0
 813598 813599 ebA45 ebA46 TRUE 0.918 15 0
 813599 813600 ebA46 ebA47 TRUE 0.855 24 0
 813600 813601 ebA47 ebA48 phbC FALSE 0.116 157 0
 813605 813606 ebA52 ebA53 TRUE 0.839 -3 0
 813608 813609 ebA56 ebD24 FALSE 0.02 420 -1.256
 813609 813610 ebD24 ebA59 TRUE 0.594 35 -0.588
 813610 813611 ebA59 ebA62 def2 FALSE 0.019 300 -1.69
 813611 813612 ebA62 ebA64 def2 dtd TRUE 0.745 43 -17.756
 813612 813613 ebA64 ebA65 dtd FALSE 0.017 475 -1.393
 813613 813614 ebA65 ebA67 TRUE 0.829 -3 0
 813614 813615 ebA67 ebB2 FALSE 0.038 350 0
 813615 813616 ebB2 ebA70 istB FALSE 0.06 237 0
 813616 813617 ebA70 ebA72 istB istA TRUE 0.957 23 0
 813617 813618 ebA72 ebB3 istA FALSE 0.075 206 0
 813618 813619 ebB3 ebA75 tnp1 FALSE 0.255 85 0
 813619 813620 ebA75 ebA78 tnp1 tnp2 FALSE 0.069 520 0
 813620 813621 ebA78 ebA82 tnp2 FALSE 0.026 696 0
 813621 813622 ebA82 ebA84 tnp3 FALSE 0.116 157 0
 813625 813626 ebA90 ebD25 FALSE 0.294 73 0
 813626 813627 ebD25 ebA93 FALSE 0.096 178 0
 813627 813628 ebA93 ebA95 TRUE 0.546 45 0
 813628 813629 ebA95 ebA96 TRUE 0.684 36 0
 813632 813633 ebA101 ebB4 TRUE 0.976 -3 37.923
 813633 813634 ebB4 ebA104 FALSE 0.041 326 0
 813634 813635 ebA104 ebA106 TRUE 0.839 -3 0
 813636 813637 ebA107 ebA108 TRUE 0.76 31 0
 813638 813639 ebt02 ebA110 tRNA-Ala sua5 FALSE 0.458 51 0
 813639 813640 ebA110 ebA114 sua5 purK TRUE 0.986 -13 51.313
 813640 813641 ebA114 ebA116 purK purE TRUE 0.992 83 1092.119
 813641 813642 ebA116 ebA118 purE folD TRUE 0.688 5 -8.955
 813642 813643 ebA118 ebA121 folD iorB TRUE 0.814 -3 -1.948
 813643 813644 ebA121 ebA122 iorB iorA TRUE 0.997 6 205.218
 813644 813645 ebA122 ebA125 iorA FALSE 0.011 404 -3.36
 813645 813646 ebA125 ebA126 TRUE 0.997 -25 0.294
 813647 813648 ebA127 ebA133 aceE FALSE 0.013 420 -3.484
 813648 813649 ebA133 ebA135 aceE aceF TRUE 0.998 22 356.959
 813649 813650 ebA135 ebA136 aceF lpd TRUE 0.999 13 363.884
 813651 813652 ebA137 ebA138 TRUE 0.991 -7 35.73
 813652 813653 ebA138 ebA139 TRUE 0.912 18 0
 813653 813654 ebA139 ebA140 TRUE 0.839 -3 0
 813654 813655 ebA140 ebA142 FALSE 0.311 70 0
 813655 813656 ebA142 ebA145 TRUE 0.769 -3 -0.363
 813659 813660 ebB5 ebA151 poxB FALSE 0.074 389 -7.103
 813660 813661 ebA151 ebA152 poxB FALSE 0.204 66 -0.441
 813662 813663 ebA154 ebA156 coxA TRUE 0.685 5 0
 813663 813664 ebA156 ebA158 coxA coxB TRUE 0.994 -3 9.993
 813665 813666 ebA159 ebA161 FALSE 0.153 133 0
 813666 813667 ebA161 ebA163 FALSE 0.031 438 0
 813668 813669 ebA165 ebA166 FALSE 0.167 71 -1.38
 813669 813670 ebA166 ebA168 FALSE 0.268 244 28.754
 813670 813671 ebA168 ebA169 TRUE 0.969 30 63.251
 813671 813672 ebA169 ebA170 TRUE 0.979 12 14.834
 813672 813673 ebA170 ebA171 TRUE 0.712 34 0
 813673 813674 ebA171 ebA172 acsA TRUE 0.742 6 0
 813675 813676 ebA173 ebA175 fumA FALSE 0.056 185 -1.317
 813676 813677 ebA175 ebA176 TRUE 0.593 0 9.096
 813677 813678 ebA176 ebA177 TRUE 0.927 -3 4.295
 813678 813679 ebA177 ebB6 norC FALSE 0.047 292 0
 813679 813680 ebB6 ebA179 norC norB TRUE 0.989 38 102.648
 813680 813681 ebA179 ebA182 norB norE TRUE 0.724 190 48.122
 813681 813682 ebA182 ebB7 norE TRUE 0.965 14 3.393
 813682 813683 ebB7 ebA183 norQ TRUE 0.824 -3 -0.033
 813683 813684 ebA183 ebA184 norQ TRUE 0.838 42 4.462
 813684 813685 ebA184 ebA186 TRUE 0.806 4 1.503
 813685 813686 ebA186 ebA188 TRUE 0.652 2 5.872
 813686 813687 ebA188 ebA189 dnrD1 TRUE 0.655 3 0.462
 813687 813688 ebA189 ebA192 dnrD1 FALSE 0.471 74 -1.392
 813688 813689 ebA192 ebt03 tRNA-Thr FALSE 0.233 98 0
 813689 813690 ebt03 ebA196 tRNA-Thr FALSE 0.134 143 0
 813691 813692 ebA199 ebA200 istB istA TRUE 0.957 23 0
 813692 813693 ebA200 ebA202 istA FALSE 0.028 572 0
 813694 813695 ebA204 ebA208 istA istB TRUE 0.97 13 0
 813698 813699 ebA218 ebA220 int FALSE 0.224 101 0
 813699 813700 ebA220 ebA222 int uspA FALSE 0.023 331 -0.433
 813701 813702 ebA224 ebA226 FALSE 0.237 56 -2.487
 813706 813707 ebt04 ebA238 tRNA-Met FALSE 0.027 670 0
 813707 813708 ebA238 ebA240 FALSE 0.038 326 0
 813710 813711 ebA246 ebA249 tnpF1 FALSE 0.094 180 0
 813711 813712 ebA249 ebA250 TRUE 0.912 14 0
 813712 813713 ebA250 ebA251 hepA TRUE 0.75 9 -0.07
 813713 813714 ebA251 ebA253 hepA TRUE 0.779 59 30.52
 813716 813717 ebA264 ebA265 TRUE 0.839 -3 0
 813717 813718 ebA265 ebA267 FALSE 0.028 564 0
 813718 813719 ebA267 ebA269 istA FALSE 0.188 115 0
 813719 813720 ebA269 ebA270 istA istB TRUE 0.93 -3 3.546
 813720 813721 ebA270 ebA272 istB FALSE 0.031 402 0
 813721 813722 ebA272 ebA274 TRUE 0.96 -16 0
 813722 813723 ebA274 ebA275 FALSE 0.181 118 0
 813725 813726 ebA280 ebA284 TRUE 0.839 -3 0
 813726 813727 ebA284 ebB8 istA FALSE 0.017 824 -0.482
 813727 813728 ebB8 ebA290 istA istA FALSE 0.478 1 0.294
 813728 813729 ebA290 ebA292 istA istA FALSE 0.252 190 0
 813729 813730 ebA292 ebA293 istA istB TRUE 0.957 23 0
 813730 813731 ebA293 ebA295 istB FALSE 0.034 403 0
 813731 813732 ebA295 ebA298 tnpF2 FALSE 0.036 375 0
 813733 813734 ebA299 ebA300 pchC pchF FALSE 0.303 0 0
 813734 813735 ebA300 ebA302 pchF FALSE 0.308 0 0
 813735 813736 ebA302 ebA303 FALSE 0.159 128 0
 813736 813737 ebA303 ebA305 FALSE 0.135 111 -0.793
 813737 813738 ebA305 ebA306 tioL FALSE 0.453 44 -0.172
 813738 813739 ebA306 ebA307 tioL chnA TRUE 0.509 38 -1.555
 813739 813740 ebA307 ebA309 chnA TRUE 0.96 46 0.515
 813740 813741 ebA309 ebA310 TRUE 0.776 23 -0.052
 813741 813742 ebA310 ebA312 FALSE 0.174 75 -0.031
 813742 813743 ebA312 ebA314 xccA TRUE 0.989 -7 5.795
 813743 813744 ebA314 ebA316 xccA xccC TRUE 0.602 2 6.806
 813744 813745 ebA316 ebB9 xccC xccB TRUE 0.98 -3 6.806
 813745 813746 ebB9 ebA318 xccB TRUE 0.934 -3 3.738
 813746 813747 ebA318 ebA321 acsA TRUE 0.667 37 0
 813747 813748 ebA321 ebA322 acsA TRUE 0.906 19 0
 813750 813751 ebA326 ebA327 TRUE 0.897 20 0
 813751 813752 ebA327 ebA329 FALSE 0.49 0 2.559
 813752 813753 ebA329 ebA332 TRUE 0.968 -28 0
 813753 813754 ebA332 ebA335 TRUE 0.804 37 1.299
 813754 813755 ebA335 ebA339 FALSE 0.033 419 0
 813755 813756 ebA339 ebA340 FALSE 0.183 117 0
 813757 813758 ebA341 ebA342 FALSE 0.406 56 0
 813758 813759 ebA342 ebA343 TRUE 0.935 -3 5.236
 813759 813760 ebA343 ebA346 FALSE 0.155 1 0
 813762 813763 ebA350 ebA351 TRUE 0.51 48 0
 813763 813764 ebA351 ebA353 nuc1 FALSE 0.084 190 0
 813765 813766 ebA355 ebA356 FALSE 0.188 115 0
 813767 813768 ebA358 ebA360 tnp7 FALSE 0.067 222 0
 813770 813771 ebA364 ebA366 istA istB TRUE 0.948 -3 0
 813772 813773 ebA367 ebB10 FALSE 0.496 49 0
 813773 813774 ebB10 ebA370 FALSE 0.47 69 1.121
 813774 813775 ebA370 ebA371 TRUE 0.969 -31 0
 813775 813776 ebA371 ebA374 TRUE 0.962 -15 0
 813776 813777 ebA374 ebA377 FALSE 0.241 146 2.421
 813777 813778 ebA377 ebA381 soj TRUE 0.86 32 2.421
 813779 813780 ebA382 ebA385 tnpF3 istA TRUE 0.529 97 0
 813781 813782 ebA387 ebA392 TRUE 0.587 4 0
 813782 813783 ebA392 ebA394 FALSE 0.062 235 0
 813784 813785 ebA395 ebA397 TRUE 0.839 -3 0
 813785 813786 ebA397 ebA398 TRUE 0.844 10 0
 813786 813787 ebA398 ebA400 TRUE 0.839 -3 0
 813787 813788 ebA400 ebA403 FALSE 0.197 112 0
 813788 813789 ebA403 ebA405 TRUE 0.917 -3 2.421
 813790 813791 ebA406 ebA407 FALSE 0.261 81 0
 813791 813792 ebA407 ebA408 FALSE 0.03 475 0
 813793 813794 ebA409 ebA410 TRUE 0.744 4 1.299
 813794 813795 ebA410 ebA412 TRUE 0.918 10 1.299
 813795 813796 ebA412 ebA415 TRUE 0.981 -13 2.421
 813796 813797 ebA415 ebA416 TRUE 0.965 14 4.017
 813797 813798 ebA416 ebA418 TRUE 0.839 -3 0
 813798 813799 ebA418 ebA419 FALSE 0.441 3 0
 813799 813800 ebA419 ebA421 FALSE 0.102 383 6.807
 813800 813801 ebA421 ebA425 TRUE 0.839 -3 0
 813801 813802 ebA425 ebA426 TRUE 0.89 12 0
 813802 813803 ebA426 ebA427 TRUE 0.839 -3 0
 813803 813804 ebA427 ebA430 TRUE 0.839 -3 0
 813804 813805 ebA430 ebA432 FALSE 0.308 0 0
 813805 813806 ebA432 ebA435 TRUE 0.87 11 0
 813806 813807 ebA435 ebA436 TRUE 0.87 11 0
 813807 813808 ebA436 ebA439 TRUE 0.885 31 0.294
 813808 813809 ebA439 ebB11 FALSE 0.027 643 0
 813809 813810 ebB11 ebA443 TRUE 0.839 -3 0
 813810 813811 ebA443 ebA449 FALSE 0.051 269 0
 813812 813813 ebA452 ebA455 istA istB TRUE 0.529 97 0
 813814 813815 ebA459 ebA462 FALSE 0.044 314 0
 813815 813816 ebA462 ebA463 FALSE 0.3 72 0
 813816 813817 ebA463 ebB12 istA FALSE 0.03 466 0
 813817 813818 ebB12 ebA466 istA istB TRUE 0.948 -3 0
 813819 813820 ebA473 ebA474 tnp8 FALSE 0.314 66 0
 813820 813821 ebA474 ebA475 tnp8 FALSE 0.233 92 0
 813821 813822 ebA475 ebA478 FALSE 0.476 49 0
 813825 813826 ebA485 ebA486 TRUE 0.523 117 0
 813826 813827 ebA486 ebA488 FALSE 0.035 392 0
 813828 813829 ebA492 ebA493 int int TRUE 0.977 -3 0
 813829 813830 ebA493 ebA494 int int TRUE 0.977 -3 0
 813830 813831 ebA494 ebA495 int int TRUE 0.887 49 0
 813831 813832 ebA495 ebA497 int int TRUE 0.993 -7 0
 813832