- Over 400 new genomes
- Thousands of new viruses and plasmids
- New microarray data and interface (for some genomes)
- Over 150 E.coli experiments imported from the Many Microbes Microarray Database
- Compare expression patterns of selected genes
- Dynamic search for other genes with similar expression
- Fast sequence search (based on FastBLAST)
- FastHMM, and a gene-domain alignment viewer
- Links to genes with known regulation at RegTransBase
- Links to proteins with solved structures at PDB
- An improved species tree, including comparisons of alternate species trees
- Trees for more gene families, and UI improvements to the gene tree browser
- CRISPR sites and CRISPR spacer sites (for some genomes)
last updated November 8, 2007
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